Contacts of the helix formed by residues 329 - 377 (chain A) in PDB entry 5SY1
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLU 329 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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326A ASP* 2.7 40.5 + - + +
328A GLN* 1.3 75.4 - - - +
330A VAL* 1.3 56.3 + - - -
331A VAL 3.1 0.4 - - - -
332A ARG* 2.8 67.7 + - - +
333A ILE* 3.0 17.3 + - + +
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Residues in contact with VAL 330 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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310A GLU* 6.4 1.8 - - + -
313A ALA* 5.8 8.1 - - + +
314A PHE* 6.2 2.0 - - - +
317A ALA* 5.8 7.0 - - + -
323A LEU* 3.7 33.0 - - + +
325A ASN 3.8 6.5 - - - +
326A ASP 3.6 13.5 - - - +
327A ARG* 3.6 11.0 - - - +
328A GLN 3.1 0.6 - - - -
329A GLU* 1.3 74.5 - - - +
331A VAL* 1.3 58.4 + - - +
333A ILE* 2.9 17.9 + - + -
334A VAL* 2.8 48.6 + - + +
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Residues in contact with VAL 331 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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308A VAL* 5.6 11.7 - - + -
310A GLU* 3.7 31.0 - - + -
327A ARG 4.6 3.1 - - - +
328A GLN* 3.3 20.0 - - + +
330A VAL* 1.3 78.3 - - - +
332A ARG* 1.3 60.1 + - - +
333A ILE 3.4 0.2 + - - -
334A VAL* 5.6 0.9 - - - -
335A VAL* 3.2 37.9 + - + +
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Residues in contact with ARG 332 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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328A GLN 4.2 0.2 + - - -
329A GLU* 2.8 52.4 + - - +
331A VAL* 1.3 78.9 - - - +
333A ILE* 1.3 84.9 + - - +
335A VAL* 4.4 2.5 - - - +
336A TYR* 3.2 34.6 + - - +
438A TRP* 5.7 5.7 - - - -
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Residues in contact with ILE 333 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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323A LEU 5.2 4.9 - - - +
325A ASN* 5.1 5.8 - - + +
329A GLU* 3.0 21.8 + - + +
330A VAL* 2.9 31.2 + - + +
332A ARG* 1.3 100.8 - - - +
334A VAL* 1.3 70.8 + - + +
336A TYR* 3.1 14.7 + - - +
337A TYR* 3.3 34.1 + - + +
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Residues in contact with VAL 334 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
308A VAL* 5.5 12.6 - - + -
313A ALA* 6.0 7.0 - - + -
330A VAL* 2.8 35.4 + - + +
331A VAL* 5.1 0.7 - - - +
333A ILE* 1.3 76.9 - - + +
335A VAL* 1.3 65.8 + - + +
337A TYR* 3.4 9.5 + - + +
338A LEU* 3.1 37.3 + - + +
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Residues in contact with VAL 335 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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305A ARG* 5.2 7.0 - - + +
308A VAL* 4.8 21.3 - - + -
331A VAL* 3.2 27.4 + - + +
332A ARG* 4.4 3.4 - - - +
333A ILE 3.2 0.4 - - - -
334A VAL* 1.3 77.8 - - - +
336A TYR* 1.3 56.6 + - - +
337A TYR 3.1 0.2 - - - -
338A LEU* 3.0 7.3 + - + +
339A TRP* 2.8 57.5 + - + +
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Residues in contact with TYR 336 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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332A ARG* 3.2 28.6 + - - +
333A ILE* 3.1 9.0 + - - +
335A VAL* 1.3 77.9 - - - +
337A TYR* 1.3 64.3 + - + +
339A TRP* 3.8 14.8 - - + +
340A CYS* 3.8 16.6 - - - -
434A ILE* 5.9 0.2 - - - +
438A TRP* 4.6 28.9 - - + -
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Residues in contact with TYR 337 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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333A ILE* 3.3 39.8 + - + -
334A VAL* 3.4 9.4 + - + +
335A VAL 3.1 0.6 - - - -
336A TYR* 1.3 82.6 - - + +
338A LEU* 1.3 59.3 + - + +
339A TRP 3.1 4.3 - - - -
340A CYS* 2.8 22.3 + - - +
341A VAL* 3.2 16.4 + - + +
430A PHE* 3.9 36.1 - + + -
434A ILE* 4.7 15.0 - - + -
438A TRP* 6.3 3.6 - + - -
440A THR* 4.8 13.2 + - - +
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Residues in contact with LEU 338 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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301A LEU* 5.6 9.6 - - + +
304A VAL* 4.0 32.5 - - + +
305A ARG* 5.1 13.3 - - + +
334A VAL* 3.1 29.3 + - + +
335A VAL* 3.0 8.6 + - + +
337A TYR* 1.3 73.7 - - + +
339A TRP* 1.3 65.7 + - - +
341A VAL* 3.8 27.5 - - + +
342A GLU* 3.9 18.7 + - - +
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Residues in contact with TRP 339 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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335A VAL* 2.8 49.0 + - + +
336A TYR* 3.8 14.6 - - + +
338A LEU* 1.3 77.5 - - - +
340A CYS* 1.3 60.3 + - - +
342A GLU* 3.1 15.5 + - - +
343A ILE* 3.0 47.6 + - + +
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Residues in contact with CYS 340 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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336A TYR 3.8 17.3 - - - -
337A TYR* 2.8 13.5 + - - +
339A TRP* 1.3 77.4 - - - +
341A VAL* 1.3 61.5 + - - +
343A ILE* 3.8 13.9 - - - +
344A CYS* 2.9 29.1 + - - +
426A LEU* 4.6 3.8 - - + +
429A VAL* 4.5 20.6 - - + +
430A PHE* 4.4 16.6 - - + -
434A ILE* 4.6 13.2 - - - -
438A TRP* 6.3 2.7 - - - -
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Residues in contact with VAL 341 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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301A LEU* 5.0 17.4 - - + +
337A TYR* 3.2 15.0 + - + +
338A LEU* 3.8 25.8 - - + +
339A TRP 3.3 0.6 - - - -
340A CYS* 1.3 77.3 - - - +
342A GLU* 1.3 63.4 + - - +
344A CYS* 3.4 4.5 + - - +
345A TYR* 3.1 25.1 + - + +
422A PHE* 4.2 17.8 - - + -
426A LEU* 5.1 8.1 - - + -
430A PHE* 5.1 11.4 - - + -
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Residues in contact with GLU 342 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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298A LEU* 3.8 25.4 - - + +
301A LEU* 4.6 18.8 - - + +
302A HIS* 3.1 37.0 + - - -
338A LEU 3.9 12.2 + - - +
339A TRP* 3.1 17.9 + - + +
341A VAL* 1.3 78.0 - - - +
343A ILE* 1.3 65.9 + - + +
345A TYR* 3.6 1.9 + - - +
346A VAL* 3.2 29.4 + - + +
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Residues in contact with ILE 343 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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339A TRP* 3.0 40.8 + - + +
340A CYS* 4.0 11.7 - - - +
342A GLU* 1.3 77.7 - - + +
344A CYS* 1.3 62.5 + - - +
346A VAL* 4.1 3.8 - - - +
347A SER* 3.1 25.4 + - - +
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Residues in contact with CYS 344 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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340A CYS 2.9 18.8 + - - +
341A VAL 3.8 3.6 - - - +
342A GLU 3.3 0.2 - - - -
343A ILE* 1.3 78.9 - - - +
345A TYR* 1.3 57.5 + - - +
347A SER* 2.6 21.3 + - - -
348A ALA* 2.8 15.1 + - - +
422A PHE* 3.5 40.6 - - + -
425A ILE* 3.9 24.5 - - + -
426A LEU* 3.7 22.4 - - + -
429A VAL* 5.7 3.6 - - + -
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Residues in contact with TYR 345 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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293A LEU* 3.3 43.5 + - - +
294A ILE* 4.9 7.6 - - + -
297A VAL* 3.3 42.8 - - + +
298A LEU* 5.3 9.9 - - + -
301A LEU* 5.5 4.0 - - + -
341A VAL* 3.1 17.5 + - + +
342A GLU* 4.4 3.6 - - - +
344A CYS* 1.3 77.5 - - - +
346A VAL* 1.3 62.2 + - + +
348A ALA* 3.6 1.4 + - - +
349A VAL* 3.3 31.1 + - + +
418A THR* 4.5 15.7 - - + +
422A PHE* 3.6 32.8 - + + -
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Residues in contact with VAL 346 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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294A ILE* 4.8 16.1 - - + +
298A LEU* 4.6 22.7 - - + -
342A GLU* 3.2 25.0 + - + +
343A ILE* 4.1 4.7 - - - +
345A TYR* 1.3 79.7 - - + +
347A SER* 1.3 63.3 + - - +
348A ALA 3.3 0.2 + - - -
349A VAL* 3.3 3.3 + - - +
350A THR* 3.1 33.7 + - + +
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Residues in contact with SER 347 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
343A ILE* 3.1 18.4 + - - -
344A CYS* 2.6 23.7 + - - -
346A VAL* 1.3 78.4 - - - +
348A ALA* 1.3 56.5 + - - +
350A THR* 3.1 10.0 + - - -
351A LEU* 3.0 29.5 + - - +
425A ILE* 3.9 19.4 - - - +
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Residues in contact with ALA 348 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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344A CYS 2.8 15.9 + - - +
345A TYR* 3.9 9.0 - - - +
346A VAL 3.2 0.4 - - - -
347A SER* 1.3 75.7 + - - +
349A VAL* 1.3 59.7 + - - +
351A LEU* 3.5 4.9 + - - +
352A SER* 3.0 28.2 + - - -
418A THR* 3.9 19.9 - - + +
421A PHE* 4.3 8.1 - - + +
422A PHE* 4.0 28.7 - - + +
425A ILE* 4.7 5.4 - - + -
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Residues in contact with VAL 349 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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290A ALA* 4.5 23.1 - - + +
293A LEU* 4.4 20.0 - - + -
294A ILE* 4.2 29.6 - - + -
345A TYR* 3.3 23.1 + - + +
346A VAL 3.3 4.1 + - - +
348A ALA* 1.3 76.8 - - - +
350A THR* 1.3 55.7 + - + +
352A SER* 3.0 9.5 + - - +
353A CYS* 2.6 36.7 + - + +
414A MET* 4.8 3.6 - - + -
418A THR* 3.7 17.3 - - + -
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Residues in contact with THR 350 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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294A ILE* 6.3 1.6 - - + -
346A VAL* 3.1 24.8 + - + +
347A SER* 3.1 18.4 + - - -
349A VAL* 1.3 78.8 - - + +
351A LEU* 1.3 60.5 + - - +
353A CYS* 4.1 6.0 - - - +
354A LEU* 3.4 22.7 + - - +
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Residues in contact with LEU 351 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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347A SER 3.0 19.0 + - - +
348A ALA 3.8 4.9 - - - +
350A THR* 1.3 77.4 + - - +
352A SER* 1.3 63.9 + - - +
354A LEU* 3.2 12.5 + - + +
355A VAL* 3.1 35.8 + - + +
421A PHE* 3.6 38.8 - - + -
425A ILE* 4.8 12.6 - - + -
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Residues in contact with SER 352 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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348A ALA 3.0 11.8 + - - -
349A VAL* 3.0 11.6 + - - -
351A LEU* 1.3 77.3 - - - +
353A CYS* 1.3 60.6 + - - +
355A VAL* 4.6 1.3 - - - +
356A ASN* 3.2 29.5 + - - -
414A MET* 3.4 11.2 - - - +
417A GLN* 3.6 28.9 - - - +
418A THR* 2.8 29.4 + - - -
421A PHE* 4.4 7.4 - - - -
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Residues in contact with CYS 353 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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286A LEU* 4.0 26.8 - - - +
290A ALA* 4.5 13.2 - - + -
349A VAL* 2.6 26.0 + - + +
350A THR* 4.5 4.9 - - - +
352A SER* 1.3 74.6 + - - +
354A LEU* 1.3 63.0 + - - +
356A ASN 3.8 0.3 + - - -
357A LEU* 3.2 24.7 + - - +
414A MET* 3.8 13.9 - - + -
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Residues in contact with LEU 354 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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350A THR 3.4 18.7 + - - +
351A LEU* 3.2 14.2 + - + +
353A CYS* 1.3 78.1 - - - +
355A VAL* 1.3 60.4 + - + +
357A LEU* 3.3 20.7 + - + +
358A LEU* 2.9 31.1 + - + +
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Residues in contact with VAL 355 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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351A LEU* 3.1 29.4 + - + +
352A SER* 4.2 4.5 - - - +
353A CYS 3.4 0.2 - - - -
354A LEU* 1.3 79.5 - - + +
356A ASN* 1.3 58.7 + - - +
358A LEU* 3.0 12.5 + - + +
359A MET* 2.8 33.9 + - + +
417A GLN* 4.6 11.9 - - - +
421A PHE* 4.8 10.8 - - + -
521A VAL* 4.0 37.2 - - + -
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Residues in contact with ASN 356 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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286A LEU* 4.3 13.7 - - + -
352A SER 3.2 5.5 + - - +
355A VAL* 1.3 73.5 - - - +
357A LEU* 1.3 64.2 + - - +
359A MET* 4.0 7.4 - - - +
360A LEU* 3.2 31.0 + - - +
410A LEU* 3.8 26.9 - - + +
413A GLY* 4.4 1.1 - - - -
414A MET* 2.7 41.2 - - - +
417A GLN* 3.0 34.0 + - - +
521A VAL 4.4 5.0 - - - +
524A GLY* 5.3 4.7 + - - -
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Residues in contact with LEU 357 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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283A PHE* 4.5 23.6 - - + -
286A LEU* 4.3 10.9 - - + +
353A CYS* 3.2 22.8 + - - +
354A LEU* 3.4 21.3 - - + +
355A VAL 3.2 0.2 - - - -
356A ASN* 1.3 77.9 - - - +
358A LEU* 1.3 61.8 + - - +
359A MET 3.5 0.2 + - - -
360A LEU* 4.6 3.6 - - + +
361A MET* 3.6 20.8 + - + +
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Residues in contact with LEU 358 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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260A SER* 6.1 1.1 - - - +
354A LEU* 2.9 18.5 + - + +
355A VAL* 3.0 14.6 + - + +
357A LEU* 1.3 77.3 - - - +
359A MET* 1.3 72.5 + - + +
361A MET* 3.8 23.3 + - + +
362A ARG* 3.2 24.9 + - + +
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Residues in contact with MET 359 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
355A VAL* 2.8 24.1 + - + +
356A ASN* 4.0 9.6 - - - +
357A LEU 3.3 0.4 - - - -
358A LEU* 1.3 95.8 - - + +
360A LEU* 1.3 55.3 + - + +
362A ARG* 2.9 11.3 + - + +
363A SER* 2.4 38.8 + - - -
521A VAL* 4.0 28.5 - - + +
522A HIS* 3.9 19.1 - - + +
524A GLY 5.7 1.3 - - - +
525A ARG* 3.6 44.2 - - + +
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Residues in contact with LEU 360 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
279A VAL* 4.6 22.2 - - + +
282A ALA* 3.7 30.3 - - + -
283A PHE* 4.5 8.5 - - + +
286A LEU* 5.3 5.8 - - + -
356A ASN 3.2 16.1 + - - +
357A LEU* 4.7 4.5 - - + +
359A MET* 1.3 74.7 - - + +
361A MET* 1.3 65.5 + - - +
363A SER* 3.7 14.3 - - - +
364A MET* 3.1 26.1 + - - +
406A GLN* 3.7 26.0 - - - +
410A LEU* 3.9 17.5 - - + -
524A GLY 4.7 8.1 - - - +
525A ARG* 5.7 1.1 - - + -
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Residues in contact with MET 361 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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260A SER* 3.9 9.2 - - - +
261A TYR* 3.3 67.8 - - + +
263A TYR* 4.6 13.6 - - + +
357A LEU* 3.6 17.2 + - + +
358A LEU* 3.9 31.9 - - + +
359A MET 3.2 0.2 - - - -
360A LEU* 1.3 79.5 - - - +
362A ARG* 1.3 64.6 + - + +
364A MET* 3.2 22.3 + - - +
365A VAL* 3.6 7.4 + - - +
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Residues in contact with ARG 362 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
259A LYS 4.6 2.4 + - - -
260A SER* 3.6 41.1 - - - +
358A LEU* 3.2 16.2 + - + +
359A MET* 2.9 19.1 + - + +
361A MET* 1.3 81.4 - - + +
363A SER* 1.3 61.6 + - - +
364A MET 3.1 2.0 + - - -
365A VAL* 3.3 35.3 - - - +
366A LEU* 3.4 28.9 + - - +
525A ARG* 4.1 25.0 - - - +
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Residues in contact with SER 363 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
279A VAL* 6.2 0.9 - - - -
359A MET 2.4 29.5 + - - -
360A LEU* 3.7 19.8 - - - +
361A MET 3.3 0.2 - - - -
362A ARG* 1.3 69.5 - - - +
364A MET* 1.3 54.4 + - - +
366A LEU 4.0 1.6 - - - +
367A HIS* 2.4 57.6 + - - -
406A GLN* 5.4 3.3 + - - -
525A ARG* 4.2 19.4 - - - +
526A LEU 5.7 0.9 + - - -
527A ASP* 3.9 15.5 + - - +
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Residues in contact with MET 364 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
263A TYR* 4.3 30.1 - - + -
271A PHE* 4.0 32.7 - - + -
279A VAL* 3.7 36.8 - - + -
360A LEU 3.1 10.9 + - - +
361A MET* 3.4 15.7 - - - +
362A ARG 3.1 0.6 - - - -
363A SER* 1.3 76.7 - - - +
365A VAL* 1.3 64.6 + - - +
366A LEU 3.2 0.4 + - - -
367A HIS* 3.5 13.8 + - - +
368A ARG* 3.6 10.2 + - - +
----------------------------------------------------------
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Residues in contact with VAL 365 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
259A LYS 5.9 1.3 - - - +
260A SER 4.2 9.0 - - - +
262A ILE 3.3 24.9 - - - +
263A TYR* 4.4 12.8 - - + +
265A PRO* 5.9 2.0 - - + -
361A MET* 3.6 5.2 + - - +
362A ARG* 3.3 44.8 + - - +
364A MET* 1.3 79.6 - - - +
366A LEU* 1.3 62.6 + - + +
368A ARG* 3.2 30.6 + - + +
369A SER* 3.4 9.1 + - - -
----------------------------------------------------------
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Residues in contact with LEU 366 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
362A ARG* 3.4 33.7 + - - +
363A SER 4.0 0.6 + - - +
364A MET 3.2 0.4 - - - -
365A VAL* 1.3 82.9 - - + +
367A HIS* 1.3 60.5 + - - +
369A SER* 3.6 15.7 - - - +
370A ASN* 2.8 49.4 + - - +
525A ARG* 3.6 13.7 - - - +
527A ASP* 3.3 32.3 - - + +
528A ILE* 6.0 1.8 - - + -
534B ASN* 6.0 4.3 - - - +
----------------------------------------------------------
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Residues in contact with HIS 367 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
271A PHE* 5.2 6.2 - - + -
275A LEU* 3.5 44.4 - - + +
278A SER* 5.9 0.2 - - - -
279A VAL* 5.6 7.3 - - + +
363A SER* 2.4 44.4 + - - -
364A MET* 3.5 9.5 + - - +
365A VAL 3.3 0.4 - - - -
366A LEU* 1.3 76.4 - - - +
368A ARG* 1.3 63.3 + - - +
370A ASN* 4.2 0.7 - - - +
371A LEU* 3.3 27.4 + - - +
402A PHE* 4.8 3.2 - + - -
406A GLN* 5.5 7.4 - - - -
526A LEU* 6.0 1.7 - - + +
527A ASP* 4.7 9.3 + - + +
545A TYR* 3.1 47.9 + + - -
549A LEU* 5.6 2.2 - - + +
----------------------------------------------------------
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Residues in contact with ARG 368 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
263A TYR* 2.7 31.8 + - - +
264A THR 4.7 2.8 + - - -
265A PRO* 4.4 18.1 + - - +
267A ASP* 4.4 20.2 - - - +
269A PHE* 3.5 52.9 + - + +
271A PHE* 4.6 15.7 - - + -
364A MET* 3.6 8.6 + - - +
365A VAL* 3.2 22.9 + - - +
366A LEU 3.2 0.6 - - - -
367A HIS* 1.3 79.2 - - - +
369A SER* 1.3 63.2 + - - +
371A LEU* 3.3 3.1 + - - +
372A LYS* 3.1 39.2 + - - +
----------------------------------------------------------
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Residues in contact with SER 369 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
365A VAL* 3.4 6.9 + - - -
366A LEU* 3.5 27.0 + - - +
367A HIS 3.4 0.2 - - - -
368A ARG* 1.3 77.6 - - - +
370A ASN* 1.3 68.4 + - - +
371A LEU 3.2 0.2 - - - -
372A LYS* 4.5 10.2 - - - +
373A GLY* 3.2 19.1 + - - -
376A ARG* 5.8 0.2 + - - -
380A LEU* 5.9 2.1 - - - +
----------------------------------------------------------
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Residues in contact with ASN 370 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
366A LEU* 2.8 46.5 + - - +
367A HIS 4.2 2.0 - - - +
369A SER* 1.3 80.0 + - - +
371A LEU* 1.3 57.2 + - - +
373A GLY* 3.7 1.3 + - - -
374A LEU* 3.3 26.0 + - - +
381A ASN* 5.2 15.5 - - + +
527A ASP* 4.3 7.1 + - - +
545A TYR* 3.4 33.2 + - - +
549A LEU* 4.0 11.8 - - + +
----------------------------------------------------------
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Residues in contact with LEU 371 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83A HIS* 5.8 0.4 - - + -
269A PHE* 3.6 24.9 - - + -
271A PHE* 5.5 0.4 - - + -
272A PRO* 3.8 29.8 - - + -
275A LEU* 5.1 4.3 - - + -
367A HIS 3.3 16.3 + - - +
368A ARG 3.3 3.2 + - - +
369A SER 3.2 0.4 - - - -
370A ASN* 1.3 77.7 - - - +
372A LYS* 1.3 65.0 + - - +
373A GLY 3.3 0.2 - - - -
374A LEU* 3.5 5.5 + - + -
375A TYR* 3.3 48.8 + - + +
549A LEU* 3.7 34.8 - - + +
552A GLU* 5.2 8.5 - - + -
553A VAL* 5.2 4.9 - - + -
----------------------------------------------------------
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Residues in contact with LYS 372 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
228A TYR* 5.0 11.0 - - + +
231A LYS* 5.3 4.0 - - - +
267A ASP* 3.6 24.9 + - - +
269A PHE* 4.5 20.4 - - + -
368A ARG* 3.1 33.0 + - - +
369A SER* 4.5 7.2 - - - +
371A LEU* 1.3 75.1 - - - +
373A GLY* 1.3 63.2 + - - +
375A TYR* 3.1 28.7 + - + +
376A ARG* 3.5 27.4 + - - +
12C GLU* 4.7 0.7 - - - +
----------------------------------------------------------
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Residues in contact with GLY 373 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
369A SER 3.2 16.3 + - - -
370A ASN 4.0 1.8 - - - -
372A LYS* 1.3 79.8 - - - +
374A LEU* 1.3 58.1 + - - +
375A TYR 3.4 0.2 - - - -
376A ARG* 4.0 18.7 - - - +
377A GLY 3.6 1.2 + - - -
378A ASP* 3.3 32.8 + - - +
380A LEU* 5.3 11.9 - - - +
381A ASN* 5.5 5.5 + - - +
385A CYS* 6.1 0.2 - - - +
----------------------------------------------------------
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Residues in contact with LEU 374 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370A ASN 3.3 14.8 + - - +
371A LEU* 3.5 7.6 + - + +
372A LYS 3.2 0.2 - - - -
373A GLY* 1.3 75.4 - - - +
375A TYR* 1.3 66.7 + - - +
376A ARG 3.4 0.2 - - - -
377A GLY* 3.7 8.3 + - - +
381A ASN* 5.2 11.9 - - + -
385A CYS* 4.3 24.5 - - + -
389A ILE* 5.0 13.3 - - + +
549A LEU* 3.3 51.4 - - + +
550A LYS* 4.5 8.5 - - + +
553A VAL* 4.0 22.4 - - + +
15C GLU* 5.1 4.7 - - - +
----------------------------------------------------------
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Residues in contact with TYR 375 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83A HIS* 5.1 8.0 - - - -
228A TYR* 3.2 27.8 - + - +
269A PHE* 4.2 21.3 - + - -
270A ARG 5.6 0.9 + - - -
371A LEU* 3.3 41.3 + - + +
372A LYS* 3.1 15.8 + - + +
374A LEU* 1.3 78.3 - - - +
376A ARG* 1.3 62.7 + - - +
377A GLY 3.3 0.5 + - - -
553A VAL* 3.6 20.0 - - + -
556A SER 5.0 1.3 + - - -
557A HIS* 3.3 30.8 + + + +
558A PRO* 3.4 37.0 - - + +
12C GLU* 4.1 14.7 - - - +
15C GLU* 3.6 22.3 - - - +
----------------------------------------------------------
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Residues in contact with ARG 376 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
235A LYS* 5.2 9.1 - - - +
369A SER 5.8 0.4 + - - -
372A LYS* 3.5 24.9 + - - +
373A GLY* 3.8 16.2 + - - +
374A LEU 3.4 0.2 - - - -
375A TYR* 1.3 76.7 - - - +
377A GLY* 1.3 60.6 + - - +
378A ASP* 3.7 26.9 - - + +
8C GLU* 4.0 42.5 + - + +
11C ALA* 3.8 28.2 - - + +
12C GLU* 3.2 38.4 + - + +
15C GLU* 4.7 3.4 - - - +
----------------------------------------------------------
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Residues in contact with GLY 377 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
373A GLY 3.6 5.2 + - - -
374A LEU* 3.7 8.2 + - - -
375A TYR 3.2 4.9 + - - -
376A ARG* 1.3 79.5 - - - +
378A ASP* 1.3 65.1 + - - +
382A VAL* 5.4 0.5 - - - +
385A CYS* 4.7 20.7 - - - +
15C GLU* 4.9 10.5 + - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il