Contacts of the helix formed by residues 329 - 377 (chain B) in PDB entry 5SY1
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLU 329 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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325B ASN 5.4 0.2 - - - +
326B ASP* 2.7 41.3 + - + +
328B GLN* 1.3 74.8 - - - +
330B VAL* 1.3 56.6 + - - -
331B VAL 3.1 0.4 - - - -
332B ARG* 2.8 66.5 + - - +
333B ILE* 3.0 17.3 + - + +
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Residues in contact with VAL 330 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
310B GLU* 6.4 2.0 - - + -
313B ALA* 5.8 8.5 - - + +
314B PHE* 6.2 2.2 - - - +
317B ALA* 5.8 7.0 - - + -
323B LEU* 3.7 33.0 - - + +
325B ASN 3.8 5.8 - - - +
326B ASP 3.6 13.2 - - - +
327B ARG* 3.6 11.7 - - - +
328B GLN 3.1 0.4 - - - -
329B GLU* 1.3 73.8 - - - +
331B VAL* 1.3 58.4 + - - +
333B ILE* 3.8 17.0 - - + -
334B VAL* 2.8 50.8 + - + +
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Residues in contact with VAL 331 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
308B VAL* 5.6 11.4 - - + -
310B GLU* 3.7 29.8 - - + -
327B ARG 4.6 3.4 - - - +
328B GLN* 3.3 19.1 - - + +
329B GLU 3.1 0.2 - - - -
330B VAL* 1.3 78.7 - - + +
332B ARG* 1.3 61.4 + - - +
333B ILE 3.4 0.2 + - - -
334B VAL* 5.6 0.9 - - - -
335B VAL* 3.2 36.5 + - + +
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Residues in contact with ARG 332 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
328B GLN 4.2 0.6 + - - -
329B GLU* 2.8 52.4 + - - +
331B VAL* 1.3 79.8 - - - +
333B ILE* 1.3 83.7 + - - +
335B VAL* 4.4 2.4 - - - +
336B TYR* 3.2 34.6 + - - +
438B TRP* 5.7 5.3 - - - -
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Residues in contact with ILE 333 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323B LEU 5.2 4.9 - - - +
324B SER* 6.6 0.2 - - - -
325B ASN* 5.1 6.5 - - + +
329B GLU* 3.0 22.5 + - + +
330B VAL* 2.9 29.5 + - + +
332B ARG* 1.3 102.0 - - - +
334B VAL* 1.3 70.8 + - + +
336B TYR* 3.1 14.1 + - - +
337B TYR* 3.3 33.7 + - + -
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Residues in contact with VAL 334 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
308B VAL* 5.5 12.6 - - + -
313B ALA* 6.0 7.0 - - + -
330B VAL* 2.8 33.7 + - + +
331B VAL* 5.1 0.7 - - - +
333B ILE* 1.3 75.5 - - + +
335B VAL* 1.3 65.8 + - + +
337B TYR* 3.4 9.5 + - + +
338B LEU* 3.1 36.4 + - + +
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Residues in contact with VAL 335 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
305B ARG* 5.2 6.7 - - + +
308B VAL* 4.8 22.2 - - + -
331B VAL* 3.2 27.3 + - + +
332B ARG* 4.4 2.2 - - - +
333B ILE 3.2 0.4 - - - -
334B VAL* 1.3 78.8 - - + +
336B TYR* 1.3 56.6 + - - +
338B LEU* 3.0 7.6 + - + +
339B TRP* 2.8 57.1 + - + +
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Residues in contact with TYR 336 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
332B ARG* 3.2 29.5 + - - +
333B ILE* 3.1 8.5 + - - +
335B VAL* 1.3 78.3 - - - +
337B TYR* 1.3 64.3 + - + +
339B TRP* 3.8 15.0 - - + +
340B CYS* 3.8 17.5 - - - -
434B ILE* 5.9 0.3 - - - +
438B TRP* 4.6 27.6 - - + -
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Residues in contact with TYR 337 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
333B ILE* 3.3 41.6 + - + +
334B VAL* 3.4 9.2 + - + +
335B VAL 3.1 0.6 - - - -
336B TYR* 1.3 81.2 - - + +
338B LEU* 1.3 59.3 + - + +
339B TRP 3.1 4.5 - - - -
340B CYS* 2.8 21.7 + - - +
341B VAL* 3.2 15.7 + - + +
430B PHE* 3.9 34.7 - + + -
434B ILE* 4.7 15.4 - - + +
438B TRP* 6.3 2.9 - + - -
440B THR* 4.8 13.0 + - - +
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Residues in contact with LEU 338 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
301B LEU* 5.6 8.7 - - + +
304B VAL* 4.0 32.5 - - + +
305B ARG* 5.1 12.9 - - + +
334B VAL* 3.1 29.9 + - + +
335B VAL* 3.0 9.3 + - + +
337B TYR* 1.3 74.2 - - + +
339B TRP* 1.3 64.7 + - - +
341B VAL* 3.8 27.6 - - + -
342B GLU* 3.9 18.4 + - - +
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Residues in contact with TRP 339 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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335B VAL* 2.8 48.9 + - + +
336B TYR* 3.8 14.8 - - + +
337B TYR 3.1 0.2 - - - -
338B LEU* 1.3 77.8 - - - +
340B CYS* 1.3 60.3 + - - +
342B GLU* 3.1 16.9 + - - +
343B ILE* 3.0 46.5 + - + +
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Residues in contact with CYS 340 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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336B TYR 3.8 17.3 - - - -
337B TYR* 2.8 14.4 + - - +
339B TRP* 1.3 76.9 - - - +
341B VAL* 1.3 60.7 + - - +
343B ILE* 3.8 13.5 - - - +
344B CYS* 2.9 29.5 + - - +
426B LEU* 4.6 3.7 - - + +
429B VAL* 4.5 20.5 - - + +
430B PHE* 4.4 15.7 - - + -
434B ILE* 4.6 13.5 - - - -
438B TRP* 6.3 3.6 - - - -
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Residues in contact with VAL 341 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
301B LEU* 5.0 17.7 - - + -
337B TYR* 3.2 15.4 + - + +
338B LEU* 3.8 26.9 - - + +
339B TRP 3.3 0.6 - - - -
340B CYS* 1.3 75.7 - - - +
342B GLU* 1.3 61.0 + - - +
344B CYS* 3.4 4.6 + - - +
345B TYR* 3.1 25.4 + - + +
422B PHE* 4.2 18.7 - - + -
426B LEU* 5.1 8.5 - - + -
430B PHE* 5.1 11.0 - - + -
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Residues in contact with GLU 342 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
298B LEU* 3.8 25.9 - - + +
301B LEU* 4.6 18.4 - - + +
302B HIS* 3.1 35.5 + - - -
338B LEU 3.9 10.9 + - - +
339B TRP* 3.1 18.3 + - + +
341B VAL* 1.3 77.2 - - - +
343B ILE* 1.3 66.3 + - + +
345B TYR* 4.4 1.9 - - - +
346B VAL* 3.2 29.9 + - + +
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Residues in contact with ILE 343 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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339B TRP* 3.0 40.9 + - + +
340B CYS* 4.0 12.6 - - - +
341B VAL 3.3 0.2 - - - -
342B GLU* 1.3 78.3 - - + +
344B CYS* 1.3 62.6 + - - +
346B VAL* 4.1 4.0 - - - +
347B SER* 3.1 25.0 + - - +
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Residues in contact with CYS 344 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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340B CYS 2.9 19.0 + - - +
341B VAL 3.8 3.6 - - - +
342B GLU 3.3 0.2 - - - -
343B ILE* 1.3 78.7 - - - +
345B TYR* 1.3 56.5 + - - +
347B SER* 2.6 21.6 + - - -
348B ALA* 2.8 15.2 + - - +
422B PHE* 3.5 40.2 - - + -
425B ILE* 3.9 24.2 - - + -
426B LEU* 3.7 22.7 - - + -
429B VAL* 5.7 3.4 - - + -
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Residues in contact with TYR 345 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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293B LEU* 3.3 44.4 + - - +
294B ILE* 4.9 6.7 - - + -
297B VAL* 3.3 42.6 - - + +
298B LEU* 5.3 9.6 - - + -
301B LEU* 5.5 3.6 - - + -
341B VAL* 3.1 17.7 + - + +
342B GLU* 4.4 4.0 - - - +
343B ILE 3.4 0.2 - - - -
344B CYS* 1.3 78.2 - - - +
346B VAL* 1.3 61.9 + - + +
348B ALA* 3.9 1.1 - - - +
349B VAL* 3.3 30.7 + - + +
418B THR* 4.5 15.5 - - + -
422B PHE* 3.6 32.8 - + + -
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Residues in contact with VAL 346 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
294B ILE* 4.8 15.0 - - + -
298B LEU* 4.6 23.3 - - + -
342B GLU* 3.2 25.7 + - + +
343B ILE* 4.1 4.3 - - - +
345B TYR* 1.3 78.6 - - + +
347B SER* 1.3 62.5 + - - +
348B ALA 3.3 0.2 + - - -
349B VAL* 3.3 3.1 + - - +
350B THR* 3.1 34.5 + - + +
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Residues in contact with SER 347 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
343B ILE* 3.1 18.3 + - - +
344B CYS* 2.6 24.3 + - - -
346B VAL* 1.3 77.8 - - - +
348B ALA* 1.3 56.7 + - - +
350B THR* 3.1 9.4 + - - -
351B LEU* 3.0 29.5 + - - +
425B ILE* 3.9 19.0 - - - +
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Residues in contact with ALA 348 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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344B CYS 2.8 16.6 + - - +
345B TYR* 3.9 8.5 - - - +
346B VAL 3.2 0.4 - - - -
347B SER* 1.3 75.2 + - - +
349B VAL* 1.3 59.7 + - - +
351B LEU* 3.5 5.0 + - - +
352B SER* 3.0 28.9 + - - -
418B THR* 3.9 19.0 - - + +
421B PHE* 4.3 7.9 - - + +
422B PHE* 4.0 29.2 - - + +
425B ILE* 4.7 6.3 - - + -
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Residues in contact with VAL 349 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
290B ALA* 4.5 22.7 - - + +
293B LEU* 4.4 20.0 - - + -
294B ILE* 4.2 29.8 - - + -
345B TYR* 3.3 22.9 + - + +
346B VAL 3.3 4.9 + - - +
348B ALA* 1.3 76.6 - - - +
350B THR* 1.3 56.0 + - + +
352B SER* 3.0 8.7 + - - +
353B CYS* 2.6 37.3 + - + +
414B MET* 4.8 3.6 - - + -
418B THR* 3.7 17.0 - - + -
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Residues in contact with THR 350 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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294B ILE* 6.3 1.6 - - + -
346B VAL* 3.1 25.6 + - + +
347B SER* 3.1 18.5 + - - -
349B VAL* 1.3 79.0 - - + +
351B LEU* 1.3 59.5 + - - +
353B CYS* 4.1 6.2 - - - +
354B LEU* 3.4 22.2 + - - +
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Residues in contact with LEU 351 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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347B SER 3.0 18.2 + - - +
348B ALA* 3.8 4.9 - - - +
349B VAL 3.1 0.2 - - - -
350B THR* 1.3 77.0 - - - +
352B SER* 1.3 63.9 + - - +
353B CYS 3.3 0.2 - - - -
354B LEU* 3.2 12.3 + - + +
355B VAL* 3.1 37.2 + - + +
421B PHE* 3.6 38.6 - - + -
425B ILE* 4.8 12.1 - - + -
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Residues in contact with SER 352 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
348B ALA 3.0 11.5 + - - -
349B VAL* 3.0 12.0 + - - -
351B LEU* 1.3 78.4 - - - +
353B CYS* 1.3 59.9 + - - +
355B VAL* 4.2 1.5 - - - +
356B ASN* 3.2 30.1 + - - -
414B MET* 3.4 11.5 - - - +
417B GLN* 3.6 27.3 - - - +
418B THR* 2.8 29.9 + - - -
421B PHE* 4.4 8.0 - - - -
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Residues in contact with CYS 353 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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286B LEU* 4.0 25.0 - - - +
290B ALA* 4.5 14.4 - - + -
349B VAL* 2.6 26.5 + - + +
350B THR* 4.5 4.9 - - - +
352B SER* 1.3 74.0 + - - +
354B LEU* 1.3 61.6 + - - +
356B ASN* 4.1 0.5 - - - -
357B LEU* 3.2 24.6 + - - +
414B MET* 3.8 14.6 - - + -
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Residues in contact with LEU 354 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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350B THR 3.4 18.6 + - - +
351B LEU* 3.2 14.4 + - + +
353B CYS* 1.3 77.2 - - - +
355B VAL* 1.3 61.5 + - + +
357B LEU* 3.3 20.6 + - + +
358B LEU* 2.9 31.1 + - + +
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Residues in contact with VAL 355 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
351B LEU* 3.1 29.2 + - + +
352B SER* 3.7 4.9 + - - +
353B CYS 3.4 0.2 - - - -
354B LEU* 1.3 80.5 - - + +
356B ASN* 1.3 58.0 + - - +
358B LEU* 3.0 12.9 + - + +
359B MET* 2.8 33.5 + - + +
417B GLN* 4.6 11.7 - - - +
421B PHE* 4.8 11.0 - - + -
521B VAL* 4.0 37.7 - - + -
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Residues in contact with ASN 356 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
286B LEU* 4.3 13.0 - - + -
352B SER 3.2 5.2 + - - +
354B LEU 3.4 0.2 - - - -
355B VAL* 1.3 73.3 - - - +
357B LEU* 1.3 63.4 + - - +
359B MET* 3.7 8.1 - - - +
360B LEU* 3.2 30.5 + - - +
410B LEU* 3.8 24.7 - - + +
413B GLY* 4.4 0.9 - - - -
414B MET* 2.7 42.0 - - - +
417B GLN* 3.0 33.1 + - - +
521B VAL 4.4 4.9 - - - +
524B GLY* 5.3 5.0 + - - -
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Residues in contact with LEU 357 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
283B PHE* 4.5 22.4 - - + -
286B LEU* 4.3 11.6 - - + +
353B CYS* 3.2 22.8 + - - +
354B LEU* 3.4 21.3 - - + +
355B VAL 3.2 0.2 - - - -
356B ASN* 1.3 77.8 - - - +
358B LEU* 1.3 60.6 + - - +
359B MET 3.5 0.2 + - - -
360B LEU* 4.5 3.6 - - + +
361B MET* 3.6 21.4 + - + +
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Residues in contact with LEU 358 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
260B SER* 6.1 0.9 - - - +
261B TYR* 6.0 0.4 - - + -
354B LEU* 2.9 18.1 + - + +
355B VAL* 3.0 15.4 + - + +
357B LEU* 1.3 77.4 - - - +
359B MET* 1.3 69.9 + - + +
361B MET* 3.8 23.3 + - + +
362B ARG* 3.2 25.1 + - + +
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Residues in contact with MET 359 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
355B VAL* 2.8 24.3 + - + +
356B ASN* 4.0 9.6 - - - +
357B LEU 3.3 0.2 - - - -
358B LEU* 1.3 95.5 - - + +
360B LEU* 1.3 56.2 + - + +
362B ARG* 3.0 11.7 + - + +
363B SER* 2.4 38.0 + - - -
521B VAL* 4.0 28.9 - - + +
522B HIS* 3.9 19.5 - - + +
524B GLY 5.7 0.9 - - - +
525B ARG* 3.6 44.2 - - + +
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Residues in contact with LEU 360 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
279B VAL* 4.6 21.2 - - + +
282B ALA* 3.7 29.6 - - + +
283B PHE* 4.5 8.5 - - + +
286B LEU* 5.3 5.4 - - + -
356B ASN 3.2 18.0 + - - +
357B LEU* 4.7 3.4 - - + +
359B MET* 1.3 75.1 - - + +
361B MET* 1.3 64.4 + - - +
363B SER* 3.7 14.7 - - - +
364B MET* 3.1 25.6 + - - +
406B GLN* 3.7 26.5 - - - +
410B LEU* 3.9 18.6 - - + -
524B GLY 4.7 8.5 - - - +
525B ARG* 5.7 0.9 - - + -
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Residues in contact with MET 361 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
260B SER* 3.9 9.9 - - - +
261B TYR* 3.3 68.6 - - + +
263B TYR* 4.6 14.1 - - + +
357B LEU* 3.6 16.6 + - + +
358B LEU* 3.9 32.8 - - + +
359B MET 3.2 0.2 - - - -
360B LEU* 1.3 79.4 - - - +
362B ARG* 1.3 63.1 + - + +
364B MET* 3.2 22.9 + - + +
365B VAL* 3.6 7.3 + - - +
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Residues in contact with ARG 362 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
259B LYS 4.6 2.8 + - - -
260B SER* 3.6 41.6 - - - +
358B LEU* 3.2 13.4 + - + +
359B MET* 3.0 18.9 + - + +
361B MET* 1.3 83.3 - - + +
363B SER* 1.3 62.0 + - - +
364B MET 3.1 2.5 + - - -
365B VAL* 3.3 35.5 - - - +
366B LEU* 3.4 28.8 + - - +
525B ARG* 4.1 23.3 - - - +
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Residues in contact with SER 363 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
279B VAL* 6.2 1.1 - - - -
359B MET 2.4 28.7 + - - -
360B LEU* 3.7 19.8 - - - +
361B MET 3.3 0.4 - - - -
362B ARG* 1.3 69.3 - - - +
364B MET* 1.3 54.4 + - - +
366B LEU 4.0 1.3 - - - +
367B HIS* 2.4 57.4 + - - -
406B GLN* 5.4 3.5 + - - -
525B ARG* 4.2 18.8 - - - +
526B LEU 5.7 1.0 + - - -
527B ASP* 3.9 16.4 + - - +
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Residues in contact with MET 364 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
263B TYR* 4.3 30.3 - - + -
271B PHE* 4.0 32.9 - - + -
279B VAL* 3.7 36.3 - - + -
360B LEU 3.1 11.5 + - - +
361B MET* 3.4 14.6 - - - +
362B ARG 3.1 1.0 - - - -
363B SER* 1.3 76.5 - - - +
365B VAL* 1.3 64.4 + - - +
366B LEU 3.2 1.0 + - - -
367B HIS* 3.5 13.5 + - - +
368B ARG* 3.6 10.6 + - - +
----------------------------------------------------------
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Residues in contact with VAL 365 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
259B LYS 5.9 1.1 - - - +
260B SER 4.2 8.7 - - - +
262B ILE 3.3 24.5 - - - +
263B TYR* 4.4 13.5 - - - +
265B PRO* 5.9 1.6 - - + -
361B MET* 3.6 5.6 + - - +
362B ARG* 3.3 45.3 - - - +
364B MET* 1.3 79.8 - - - +
366B LEU* 1.3 62.3 + - + +
368B ARG* 3.2 29.1 + - + +
369B SER* 3.4 8.5 + - - -
----------------------------------------------------------
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Residues in contact with LEU 366 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
534A ASN* 5.9 4.3 - - - +
362B ARG* 3.4 34.3 + - - +
363B SER 4.6 0.7 - - - +
364B MET 3.2 0.6 - - - -
365B VAL* 1.3 81.5 - - + +
367B HIS* 1.3 59.8 + - - +
369B SER* 3.6 15.9 - - - +
370B ASN* 2.8 49.8 + - - +
525B ARG* 3.6 13.7 - - - +
527B ASP* 3.3 32.5 - - + +
528B ILE* 6.0 1.6 - - + -
----------------------------------------------------------
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Residues in contact with HIS 367 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
269B PHE* 4.9 0.2 - - - -
271B PHE* 5.2 5.8 - - + -
275B LEU* 3.5 44.0 - - + +
278B SER* 5.9 0.2 - - - -
279B VAL* 5.6 8.4 - - + +
363B SER* 2.4 45.5 + - - -
364B MET* 3.5 9.5 + - - +
365B VAL 3.3 0.4 - - - -
366B LEU* 1.3 76.2 - - - +
368B ARG* 1.3 63.4 + - - +
370B ASN* 4.2 0.9 - - - +
371B LEU* 3.3 27.4 + - - +
402B PHE* 4.8 3.8 - + - -
406B GLN* 5.5 6.3 - - - -
526B LEU* 6.0 1.5 - - + +
527B ASP* 4.7 9.5 + - + +
545B TYR* 3.1 47.4 + + - -
549B LEU* 5.6 1.8 - - + +
----------------------------------------------------------
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Residues in contact with ARG 368 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
263B TYR* 2.7 32.2 + - - +
264B THR 4.7 2.6 + - - -
265B PRO* 4.4 18.6 + - - +
267B ASP* 4.4 19.8 - - - +
269B PHE* 3.5 51.2 + - + +
271B PHE* 4.6 15.9 - - + -
364B MET* 3.6 9.6 + - - +
365B VAL* 3.2 22.7 + - - +
366B LEU 3.2 0.6 - - - -
367B HIS* 1.3 78.9 - - - +
369B SER* 1.3 62.2 + - - +
371B LEU* 3.3 3.5 + - - +
372B LYS* 3.1 39.8 + - - +
----------------------------------------------------------
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Residues in contact with SER 369 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
365B VAL* 3.4 6.2 + - - -
366B LEU* 3.5 26.7 + - - +
367B HIS 3.4 0.2 - - - -
368B ARG* 1.3 79.1 - - - +
370B ASN* 1.3 66.9 + - - +
372B LYS* 4.5 9.8 - - - +
373B GLY* 3.2 19.4 + - - -
376B ARG* 5.8 0.3 + - - -
380B LEU* 5.9 2.1 - - - +
----------------------------------------------------------
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Residues in contact with ASN 370 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
366B LEU* 2.8 46.1 + - - +
367B HIS 4.2 2.0 - - - +
369B SER* 1.3 81.0 + - - +
371B LEU* 1.3 57.2 + - - +
373B GLY* 4.0 1.6 - - - -
374B LEU* 3.3 26.0 + - - +
381B ASN* 5.2 15.7 - - + +
527B ASP* 4.3 6.3 + - - +
545B TYR* 3.4 33.6 + - - +
549B LEU* 4.0 11.6 - - + +
----------------------------------------------------------
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Residues in contact with LEU 371 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83B HIS* 5.8 0.2 - - + -
269B PHE* 3.6 24.5 - - + -
270B ARG 5.5 0.2 - - - +
271B PHE* 5.5 0.7 - - + -
272B PRO* 3.8 29.2 - - + -
275B LEU* 5.1 3.8 - - + -
367B HIS 3.3 16.3 + - - +
368B ARG 3.3 3.7 + - - +
369B SER 3.2 0.4 - - - -
370B ASN* 1.3 79.2 - - - +
372B LYS* 1.3 63.9 + - - +
373B GLY 3.3 0.2 - - - -
374B LEU* 3.5 5.3 + - + +
375B TYR* 3.3 48.7 + - + +
549B LEU* 3.7 34.8 - - + +
552B GLU* 5.2 8.3 - - + -
553B VAL* 5.2 4.7 - - + -
----------------------------------------------------------
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Residues in contact with LYS 372 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
228B TYR* 5.0 11.0 - - + +
231B LYS* 5.3 4.4 - - - +
267B ASP* 3.6 25.1 + - - +
269B PHE* 4.5 19.7 - - + -
368B ARG* 3.1 33.8 + - - +
369B SER* 4.5 7.0 - - - +
371B LEU* 1.3 76.6 - - - +
373B GLY* 1.3 63.1 + - - +
375B TYR* 3.1 28.8 + - + +
376B ARG* 3.5 26.9 + - - +
12D GLU* 4.8 0.9 - - - +
----------------------------------------------------------
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Residues in contact with GLY 373 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
369B SER 3.2 17.4 + - - -
370B ASN 4.0 2.0 - - - -
371B LEU 3.3 0.2 - - - -
372B LYS* 1.3 77.8 - - - +
374B LEU* 1.3 58.0 + - - +
375B TYR 3.4 0.2 - - - -
376B ARG* 3.8 19.8 + - - +
377B GLY 3.6 1.2 + - - -
378B ASP* 3.3 32.6 + - - +
380B LEU* 5.3 11.4 - - - +
381B ASN* 5.5 5.8 + - - +
385B CYS* 6.1 0.5 - - - +
----------------------------------------------------------
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Residues in contact with LEU 374 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370B ASN 3.3 14.6 + - - +
371B LEU* 3.5 8.5 + - + +
372B LYS 3.2 0.4 - - - -
373B GLY* 1.3 75.0 - - - +
375B TYR* 1.3 67.5 + - - +
376B ARG 3.4 0.4 - - - -
377B GLY* 3.7 8.2 + - - +
381B ASN* 5.2 11.0 - - + +
385B CYS* 4.2 24.7 - - + -
389B ILE* 5.0 13.3 - - + +
549B LEU* 3.3 50.9 - - + +
550B LYS* 4.5 7.9 - - + +
553B VAL* 4.0 23.0 - - + +
15D GLU* 4.9 4.7 - - - +
----------------------------------------------------------
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Residues in contact with TYR 375 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83B HIS* 5.1 8.0 - - - -
224B TYR* 5.7 0.2 + - - -
228B TYR* 3.2 30.1 - + - +
269B PHE* 4.2 20.8 - + - -
270B ARG 5.6 0.5 + - - -
371B LEU* 3.3 40.6 + - + +
372B LYS* 3.1 16.3 + - + +
374B LEU* 1.3 77.8 - - - +
376B ARG* 1.3 62.2 + - - +
553B VAL* 3.6 20.6 - - + -
556B SER 5.0 1.4 + - - -
557B HIS* 3.3 31.0 + + + +
558B PRO* 3.4 37.1 - - + +
12D GLU* 4.3 11.8 - - - +
15D GLU* 3.3 26.9 - - - +
----------------------------------------------------------
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Residues in contact with ARG 376 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
235B LYS* 5.2 9.3 - - - +
369B SER 5.8 0.2 + - - -
372B LYS* 3.5 25.5 + - - +
373B GLY* 3.8 15.4 + - - +
374B LEU 3.4 0.2 - - - -
375B TYR* 1.3 75.8 - - - +
377B GLY* 1.3 61.2 + - - +
378B ASP* 3.7 26.6 - - + +
8D GLU* 4.1 42.8 + - - +
11D ALA* 3.7 27.1 - - + +
12D GLU* 3.4 38.6 + - + +
15D GLU* 4.6 3.8 - - - +
----------------------------------------------------------
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Residues in contact with GLY 377 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
373B GLY 3.6 4.3 + - - -
374B LEU* 3.7 9.1 + - - -
375B TYR 3.2 5.3 + - - -
376B ARG* 1.3 77.9 - - - +
378B ASP* 1.3 64.8 + - - +
382B VAL* 5.4 0.3 - - - +
385B CYS* 4.7 20.4 - - - +
15D GLU* 4.6 10.7 + - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il