Contacts of the helix formed by residues 583 - 632 (chain A) in PDB entry 5SZK
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLU 583 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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571A ALA 4.2 7.9 - - - +
572A LEU* 3.3 25.9 - - - +
573A ARG* 4.2 9.0 - - - +
582A ASP* 1.3 75.3 - - - +
584A ALA* 1.3 58.9 + - - +
585A GLN 3.2 0.7 - - - -
586A LEU* 3.3 7.8 + - + +
587A LEU* 2.8 47.2 + - + +
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Residues in contact with ALA 584 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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582A ASP* 3.1 10.5 - - + +
583A GLU* 1.3 77.9 - - - +
585A GLN* 1.3 62.7 + - - +
587A LEU* 4.1 9.1 - - - +
588A GLN* 3.2 26.2 + - - +
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Residues in contact with GLN 585 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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582A ASP 2.8 39.9 + - - +
584A ALA* 1.3 74.6 - - - +
586A LEU* 1.3 74.5 + - + +
588A GLN* 4.4 2.2 - - - +
589A GLU* 3.3 26.5 + - - +
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Residues in contact with LEU 586 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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567A ARG* 4.3 22.0 - - - +
568A LEU* 3.3 18.4 - - + +
571A ALA* 3.8 31.9 - - + +
582A ASP 5.1 1.8 - - - +
583A GLU* 3.3 8.8 + - + +
584A ALA 3.2 0.4 - - - -
585A GLN* 1.3 100.9 - - + +
587A LEU* 1.3 63.2 + - - +
588A GLN 3.2 1.6 - - - -
589A GLU* 3.2 23.7 + - + +
590A TRP* 3.0 20.8 + - - +
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Residues in contact with LEU 587 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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583A GLU* 2.8 40.3 + - + +
584A ALA* 4.1 8.1 - - - +
586A LEU* 1.3 72.8 - - - +
588A GLN* 1.3 59.9 + - - +
590A TRP* 3.5 16.2 + - + +
591A PHE* 3.1 23.7 + - - +
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Residues in contact with GLN 588 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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584A ALA 3.2 17.8 + - - +
585A GLN* 4.6 1.8 - - - +
586A LEU 3.2 0.4 - - - -
587A LEU* 1.3 79.0 - - - +
589A GLU* 1.3 61.0 + - - +
591A PHE* 3.4 23.4 - - + +
592A LYS* 2.9 40.6 + - + +
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Residues in contact with GLU 589 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
564A GLN* 5.1 5.9 - - - +
567A ARG* 3.9 17.8 + - - -
568A LEU* 3.8 13.8 - - + +
585A GLN* 3.3 15.2 + - - +
586A LEU* 3.2 28.5 + - - +
588A GLN* 1.3 78.9 - - - +
590A TRP* 1.3 57.3 + - - +
592A LYS* 3.6 11.3 + - + +
593A LEU* 3.1 24.3 + - - +
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Residues in contact with TRP 590 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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565A GLY* 5.2 5.8 - - - -
568A LEU* 3.6 32.7 - - + +
569A GLU 5.6 1.3 - - - -
586A LEU 3.0 10.5 + - - +
587A LEU* 4.1 16.2 - - + +
589A GLU* 1.3 75.9 - - - +
591A PHE* 1.3 83.6 + + + +
593A LEU* 3.1 18.6 + - + +
594A VAL* 3.1 49.7 + - + +
597A LYS* 6.2 0.2 - - - +
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Residues in contact with PHE 591 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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587A LEU 3.1 15.8 + - - +
588A GLN* 3.2 30.7 + - + +
590A TRP* 1.3 92.8 - + + +
592A LYS* 1.3 70.9 + - + +
594A VAL* 3.2 14.4 + - + +
595A LEU* 3.4 41.4 + - + +
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Residues in contact with LYS 592 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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588A GLN* 2.9 27.9 + - + +
589A GLU* 3.8 10.3 - - + +
591A PHE* 1.3 83.6 - - + +
593A LEU* 1.3 63.9 + - - +
595A LEU* 3.6 8.5 + - + +
596A GLU* 3.0 25.2 + - - +
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Residues in contact with LEU 593 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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561A SER* 3.6 37.2 - - - +
564A GLN* 4.2 18.2 - - + +
565A GLY* 3.5 36.3 - - - +
568A LEU* 4.4 7.4 - - + -
589A GLU 3.1 16.5 + - - +
590A TRP* 3.1 19.5 + - + +
592A LYS* 1.3 78.1 - - - +
594A VAL* 1.3 57.0 + - + +
596A GLU* 3.6 9.0 - - + +
597A LYS* 2.8 44.0 + - + +
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Residues in contact with VAL 594 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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590A TRP* 3.1 55.3 + - + +
591A PHE* 3.2 8.7 + - + +
593A LEU* 1.3 74.8 - - + +
595A LEU* 1.3 71.0 + - + +
597A LYS* 3.4 8.5 + - + +
598A ASN* 3.0 23.8 + - + +
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Residues in contact with LEU 595 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
591A PHE* 3.4 39.8 + - + +
592A LYS* 3.9 9.2 - - + +
594A VAL* 1.3 80.2 - - + +
596A GLU* 1.3 64.5 + - - +
598A ASN* 3.0 8.9 + - + +
599A LYS* 2.9 41.2 + - + +
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Residues in contact with GLU 596 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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557A ARG* 4.6 12.1 + - - +
561A SER* 4.9 9.9 - - - -
592A LYS 3.0 19.7 + - - +
593A LEU* 3.6 10.3 - - + +
595A LEU* 1.3 75.2 - - - +
597A LYS* 1.3 64.8 + - - +
599A LYS* 3.2 21.9 + - - +
600A LEU* 3.1 52.3 + - + +
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Residues in contact with LYS 597 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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561A SER* 3.5 41.9 + - - +
562A GLU* 2.8 39.5 + - - +
565A GLY* 4.4 4.4 - - - -
593A LEU* 2.8 42.2 + - + +
594A VAL* 3.6 7.4 - - - +
596A GLU* 1.3 73.3 - - - +
598A ASN* 1.3 64.1 + - - +
600A LEU* 3.5 7.8 + - - +
601A MET* 3.0 22.0 + - - +
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Residues in contact with ASN 598 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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594A VAL* 3.0 13.8 + - + +
595A LEU* 3.0 13.5 + - + +
597A LYS* 1.3 76.7 - - - +
599A LYS* 1.3 58.3 + - - +
601A MET* 3.2 24.8 + - - +
602A ARG* 2.9 62.4 + - - +
677A GLU* 4.7 5.6 + - - -
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Residues in contact with LYS 599 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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595A LEU* 2.9 30.0 + - + +
596A GLU* 3.6 29.2 - - - +
598A ASN* 1.3 73.3 - - + +
600A LEU* 1.3 62.9 + - + +
602A ARG* 3.1 10.2 + - - +
603A TYR* 2.8 31.4 + - - +
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Residues in contact with LEU 600 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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554A VAL* 4.0 14.4 - - + +
557A ARG* 3.7 60.8 - - + +
558A GLN* 3.6 23.9 + - + +
561A SER* 4.6 5.4 - - - +
596A GLU* 3.1 44.8 + - + +
597A LYS* 3.9 4.9 - - - +
599A LYS* 1.3 76.4 - - + +
601A MET* 1.3 58.3 + - - +
603A TYR* 3.9 8.2 - - + +
604A GLU* 2.9 31.2 + - - +
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Residues in contact with MET 601 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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558A GLN* 4.4 7.1 - - - +
597A LYS 3.0 14.7 + - - +
598A ASN* 3.4 27.6 - - - +
599A LYS 3.1 0.2 - - - -
600A LEU* 1.3 79.7 - - - +
602A ARG* 1.3 70.4 + - + +
603A TYR 3.3 0.5 + - - -
604A GLU* 3.9 6.6 - - - +
605A SER* 3.3 20.3 + - - -
673A ARG* 5.3 9.9 - - - +
677A GLU* 6.1 0.7 - - - +
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Residues in contact with ARG 602 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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598A ASN* 2.9 42.7 + - - +
599A LYS* 3.1 9.8 + - - +
601A MET* 1.3 80.0 - - + +
603A TYR* 1.3 59.7 + - - +
605A SER* 3.1 21.2 + - - -
606A GLU* 3.3 11.8 + - - +
670A GLN* 4.1 3.7 + - - +
673A ARG* 4.3 10.3 - - - +
674A GLU* 3.3 43.5 + - - +
677A GLU* 2.7 38.0 + - - +
678A ASP* 3.1 35.8 + - - -
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Residues in contact with TYR 603 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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550A GLN* 2.4 39.4 + - - +
554A VAL* 3.4 28.3 - - + -
557A ARG* 5.4 6.3 - - - -
599A LYS 2.8 17.0 + - - +
600A LEU* 3.9 9.4 - - + +
601A MET 3.2 0.2 - - - -
602A ARG* 1.3 75.4 - - - +
604A GLU* 1.3 66.5 + - - +
606A GLU* 3.3 5.4 + - + +
607A LEU* 3.0 53.8 + - + +
1B MET* 2.9 21.1 - - + +
2B ALA* 3.3 40.8 - - + -
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Residues in contact with GLU 604 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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551A LEU* 3.8 24.0 - - + +
554A VAL* 4.1 9.1 - - + +
555A GLU* 5.1 8.9 - - + +
558A GLN* 2.9 29.5 + - - +
600A LEU 2.9 16.2 + - - +
601A MET* 3.9 7.7 - - - +
603A TYR* 1.3 77.9 - - - +
605A SER* 1.3 62.3 + - - +
607A LEU* 3.3 3.5 + - - +
608A LEU* 3.0 45.5 + - + +
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Residues in contact with SER 605 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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601A MET 3.3 11.3 + - - -
602A ARG* 3.1 13.7 + - - -
603A TYR 3.2 0.6 - - - -
604A GLU* 1.3 78.4 - - - +
606A GLU* 1.3 65.1 + - - +
608A LEU* 3.5 14.3 + - - +
609A ILE* 3.3 25.3 + - - +
670A GLN* 3.2 22.8 + - - -
673A ARG* 4.6 7.2 + - - -
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Residues in contact with GLU 606 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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602A ARG 3.3 12.7 + - - +
603A TYR* 3.3 6.2 + - + +
604A GLU 3.3 0.4 - - - -
605A SER* 1.3 79.6 + - - +
607A LEU* 1.3 66.8 + - + +
609A ILE* 3.0 9.4 + - - +
610A MET* 2.9 38.4 + - + +
667A LEU* 4.5 17.4 - - + +
670A GLN* 4.2 15.3 + - - +
2B ALA* 3.4 27.4 - - + +
3B LYS* 3.2 32.0 + - - +
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Residues in contact with LEU 607 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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547A ILE* 3.5 28.5 - - + +
550A GLN* 3.5 24.7 - - + +
551A LEU* 3.9 29.2 - - + +
554A VAL* 4.3 2.5 - - + -
603A TYR* 3.0 66.7 + - + +
604A GLU 3.7 3.6 - - - +
606A GLU* 1.3 76.4 - - - +
608A LEU* 1.3 61.9 + - - +
610A MET* 3.3 19.9 + - + +
611A ALA* 3.0 19.9 + - - +
1B MET* 5.0 4.5 - - - -
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Residues in contact with LEU 608 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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551A LEU* 3.6 28.0 - - + -
604A GLU* 3.0 49.2 + - + +
605A SER* 3.6 10.8 - - - +
607A LEU* 1.3 75.9 - - - +
609A ILE* 1.3 62.8 + - + +
611A ALA* 3.5 7.7 + - + +
612A GLN* 3.1 35.0 + - - +
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Residues in contact with ILE 609 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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605A SER* 3.3 13.1 + - - +
606A GLU* 3.0 8.1 + - - +
608A LEU* 1.3 75.8 - - + +
610A MET* 1.3 59.0 + - + +
612A GLN* 2.7 36.2 + - - +
613A GLU* 2.8 27.8 + - + +
663A LEU* 4.2 19.1 - - + -
666A SER* 3.4 24.0 - - - +
667A LEU* 4.0 30.7 - - + -
670A GLN* 4.0 17.7 - - - +
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Residues in contact with MET 610 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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543A LYS* 4.1 20.0 - - - -
547A ILE* 3.7 26.7 - - + -
606A GLU* 2.9 38.0 + - + +
607A LEU* 3.6 20.2 - - + +
609A ILE* 1.3 76.2 - - + +
611A ALA* 1.3 60.7 + - - +
613A GLU* 3.5 20.6 + - - +
614A LEU* 3.3 28.4 + - - +
667A LEU* 5.8 2.9 - - + -
1B MET* 3.8 25.8 - - - +
3B LYS* 5.4 1.6 - - + -
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Residues in contact with ALA 611 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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544A ALA* 6.3 1.6 - - - +
547A ILE* 4.2 10.5 - - + +
548A GLN* 4.1 22.4 - - - +
551A LEU* 5.6 0.9 - - + -
607A LEU 3.0 13.6 + - - +
608A LEU* 3.6 11.9 - - + +
609A ILE 2.9 0.2 + - - -
610A MET* 1.3 74.4 - - - +
612A GLN* 1.3 63.8 + - - +
614A LEU* 3.5 5.4 + - - +
615A GLU* 3.2 27.3 + - - +
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Residues in contact with GLN 612 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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608A LEU* 3.1 31.1 + - - +
609A ILE* 2.7 22.8 + - - +
611A ALA* 1.3 69.5 - - + +
613A GLU* 1.3 63.7 + - - +
615A GLU* 3.4 12.1 + - - +
616A LEU* 3.0 31.0 + - + +
663A LEU* 3.9 27.3 - - + +
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Residues in contact with GLU 613 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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609A ILE* 2.8 27.8 + - + +
610A MET* 3.5 23.1 - - - +
612A GLN* 1.3 72.8 - - - +
614A LEU* 1.3 59.8 + - + +
616A LEU* 3.2 6.2 + - - +
617A GLU* 2.8 43.1 + - - +
660A ARG* 4.9 5.5 - - + +
663A LEU* 3.8 27.0 - - + +
664A VAL* 4.3 11.8 - - - +
667A LEU* 3.6 24.1 - - - +
47B ILE* 6.1 0.7 - - - +
58B LYS* 5.1 0.9 + - - -
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Residues in contact with LEU 614 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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540A ARG* 3.6 26.6 - - + +
543A LYS* 3.8 33.2 - - + +
544A ALA* 3.6 35.0 - - + +
547A ILE* 3.9 8.3 - - + -
610A MET 3.3 17.5 + - - +
611A ALA* 3.5 6.0 + - - +
612A GLN 3.3 0.2 - - - -
613A GLU* 1.3 74.0 - - + +
615A GLU* 1.3 65.7 + - - +
617A GLU* 3.8 27.4 - - - +
618A ASP* 3.0 23.4 + - - +
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Residues in contact with GLU 615 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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611A ALA* 3.2 18.0 + - - +
612A GLN* 3.8 12.1 - - - +
613A GLU 3.3 0.2 - - - -
614A LEU* 1.3 77.9 - - - +
616A LEU* 1.3 58.4 + - + +
618A ASP* 3.3 7.1 + - + +
619A HIS* 3.0 27.0 + - - +
622A ARG* 5.4 0.5 + - - -
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Residues in contact with LEU 616 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
612A GLN* 3.0 15.6 + - + +
613A GLU* 3.5 5.8 - - - +
615A GLU* 1.3 72.9 - - + +
617A GLU* 1.3 60.4 + - - +
618A ASP 3.1 1.8 - - - -
619A HIS* 3.2 7.7 + - + +
620A GLN* 2.7 31.8 + - - +
656A VAL* 3.5 18.3 - - + +
659A GLN* 3.9 30.7 - - + +
660A ARG* 3.9 34.3 - - + +
663A LEU* 3.5 32.1 - - + -
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Residues in contact with GLU 617 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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540A ARG* 4.0 19.8 + - - +
613A GLU* 2.8 32.3 + - - +
614A LEU* 3.8 28.9 - - - +
615A GLU 3.4 0.2 - - - -
616A LEU* 1.3 73.4 - - - +
618A ASP* 1.3 61.0 + - - +
620A GLN* 3.8 8.0 - - - +
621A SER* 3.3 21.3 + - - -
660A ARG* 4.0 29.2 + - - +
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Residues in contact with ASP 618 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
537A GLU* 4.4 9.0 - - - +
540A ARG* 2.7 35.8 + - - +
614A LEU 3.0 17.3 + - - +
615A GLU* 3.6 6.7 - - - +
617A GLU* 1.3 76.9 - - - +
619A HIS* 1.3 64.8 + - - +
621A SER* 3.1 5.7 + - - -
622A ARG* 2.4 52.2 + - - +
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Residues in contact with HIS 619 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
615A GLU 3.0 16.3 + - - +
616A LEU* 3.7 10.4 - - + +
618A ASP* 1.3 77.9 - - - +
620A GLN* 1.3 62.5 + - - +
622A ARG* 3.2 33.5 + - + +
623A LEU* 3.0 39.7 + - + +
652A GLU* 3.5 25.9 + - + -
656A VAL* 3.6 18.6 - - + +
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Residues in contact with GLN 620 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
616A LEU 2.7 20.3 + - - +
617A GLU* 3.8 6.9 - - - +
619A HIS* 1.3 73.0 - - - +
621A SER* 1.3 57.5 + - - +
623A LEU* 4.6 1.3 - - - -
624A GLU* 2.8 43.9 + - - +
653A LEU* 3.6 19.0 - - + +
656A VAL* 3.8 12.2 - - + +
657A ILE* 3.6 19.7 - - + +
660A ARG* 2.5 35.8 + - - +
44B ASP* 2.7 33.9 + - - -
----------------------------------------------------------
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Residues in contact with SER 621 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
540A ARG* 4.2 20.1 + - - -
617A GLU 3.3 11.8 + - - -
618A ASP* 3.1 11.0 + - - -
620A GLN* 1.3 79.8 - - - +
622A ARG* 1.3 64.3 + - - +
624A GLU* 4.0 5.6 - - - +
625A GLN* 3.2 26.9 + - - +
----------------------------------------------------------
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Residues in contact with ARG 622 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
615A GLU 5.4 0.6 + - - -
618A ASP* 2.4 44.0 + - - +
619A HIS* 3.2 40.1 + - + +
621A SER* 1.3 76.8 - - - +
623A LEU* 1.3 60.1 + - + +
625A GLN* 3.4 5.6 + - - +
626A LYS* 3.0 29.2 + - - +
----------------------------------------------------------
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Residues in contact with LEU 623 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
619A HIS* 3.0 31.7 + - + +
620A GLN* 3.8 3.1 - - - +
622A ARG* 1.3 73.9 - - + +
624A GLU* 1.3 66.3 + - - +
626A LYS* 3.2 11.2 + - + -
627A LEU* 2.8 21.3 + - - +
649A VAL* 3.4 27.5 - - + +
652A GLU* 3.7 48.2 - - + +
653A LEU* 3.7 14.8 - - + +
656A VAL* 3.6 31.4 - - + -
----------------------------------------------------------
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Residues in contact with GLU 624 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
620A GLN* 2.8 43.3 + - - +
621A SER* 4.0 5.9 - - - +
623A LEU* 1.3 73.3 - - - +
625A GLN* 1.3 63.8 + - - +
627A LEU* 3.4 2.9 + - - +
628A ARG* 3.0 58.3 + - - +
653A LEU* 3.8 19.0 - - + +
38B ILE* 5.7 0.2 - - - +
41B ILE* 4.4 10.5 - - + +
44B ASP* 4.8 4.7 - - - +
----------------------------------------------------------
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Residues in contact with GLN 625 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
621A SER* 3.2 18.4 + - - +
622A ARG* 3.7 5.7 - - - +
623A LEU 3.2 0.2 - - - -
624A GLU* 1.3 79.5 - - - +
626A LYS* 1.3 61.3 + - - +
628A ARG* 3.1 18.0 + - + +
629A GLU* 3.2 33.2 + - + +
----------------------------------------------------------
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Residues in contact with LYS 626 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
622A ARG 3.0 18.8 + - - +
623A LEU* 3.2 13.9 + - + +
625A GLN* 1.3 77.6 - - - +
627A LEU* 1.3 62.4 + - - +
629A GLU* 3.5 12.1 + - - +
630A LYS* 3.4 36.2 + - + +
645A GLU* 5.3 5.5 + - - -
649A VAL* 4.0 27.6 - - + -
----------------------------------------------------------
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Residues in contact with LEU 627 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
623A LEU 2.8 16.5 + - - +
624A GLU* 3.8 4.5 - - - +
626A LYS* 1.3 76.4 - - - +
628A ARG* 1.3 63.1 + - - +
630A LYS* 3.2 5.9 + - + +
631A MET* 3.1 36.2 + - + +
646A GLU* 3.6 42.8 - - + +
649A VAL* 3.7 13.9 - - + +
650A PHE* 4.0 17.7 - - + -
653A LEU* 4.0 13.2 - - + -
41B ILE* 3.8 35.4 - - + -
----------------------------------------------------------
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Residues in contact with ARG 628 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
624A GLU* 3.0 44.4 + - - +
625A GLN* 3.1 8.0 + - + +
627A LEU* 1.3 75.4 - - - +
629A GLU* 1.3 62.8 + - + +
631A MET* 3.0 23.5 + - - +
632A LEU* 3.3 18.0 + - + +
38B ILE* 3.3 31.7 + - - +
39B SER* 2.7 34.9 + - - +
40B THR* 4.3 1.8 - - - +
41B ILE* 3.4 36.0 - - + +
----------------------------------------------------------
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Residues in contact with GLU 629 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
625A GLN* 3.2 40.7 + - + +
626A LYS* 3.8 11.9 - - - +
628A ARG* 1.3 75.8 - - + +
630A LYS* 1.3 62.0 + - + +
632A LEU* 3.2 31.8 + - + +
633A LYS* 4.4 3.6 + - - +
----------------------------------------------------------
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Residues in contact with LYS 630 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
626A LYS* 3.4 22.9 - - + +
627A LEU* 3.2 9.5 + - - +
629A GLU* 1.3 76.8 - - + +
631A MET* 1.3 59.5 + - - +
632A LEU 3.3 0.6 + - - -
633A LYS* 3.9 14.5 + - - +
638A LYS* 3.5 16.3 + - - +
642A ASP* 3.9 22.0 + - - +
645A GLU* 3.3 48.1 + - - +
646A GLU* 3.7 34.5 - - + +
649A VAL* 4.6 11.7 - - + -
----------------------------------------------------------
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Residues in contact with MET 631 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
627A LEU* 3.1 43.2 + - + +
628A ARG* 3.0 17.1 + - - +
630A LYS* 1.3 73.7 - - - +
632A LEU* 1.3 62.0 + - + +
633A LYS 3.0 15.6 - - - +
638A LYS* 4.1 6.2 + - - +
646A GLU* 3.9 17.5 - - + +
650A PHE* 5.8 2.0 - - + -
41B ILE* 4.2 26.9 - - + -
69B ARG* 3.8 27.4 - - - +
70B PHE* 4.8 4.7 - - + -
----------------------------------------------------------
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Residues in contact with LEU 632 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
628A ARG 3.3 14.0 + - - +
629A GLU* 3.2 23.3 + - + +
631A MET* 1.3 79.4 - - + +
633A LYS* 1.3 60.6 + - + +
634A GLU 3.7 0.5 + - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il