Contacts of the helix formed by residues 47 - 82 (chain D) in PDB entry 5T0I


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with LEU 47 (chain D).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     22C  GLN*     3.2    37.7    -      -       -      +
     25C  LEU*     3.8    14.6    -      -       +      -
     43D  ARG*     2.7    30.7    +      -       +      +
     46D  LYS*     1.3    76.3    -      -       +      +
     48D  GLN*     1.3    60.4    +      -       -      +
     50D  GLU*     2.9    35.9    -      -       -      +
     51D  LEU*     3.5    10.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 48 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     25C  LEU*     3.8    19.5    -      -       +      +
     44D  TYR      2.7    22.3    -      -       -      +
     45D  LYS*     2.5    43.7    +      -       -      +
     47D  LEU*     1.3    70.9    -      -       -      +
     49D  GLN*     1.3    70.2    +      -       -      +
     50D  GLU      3.6     0.2    -      -       -      -
     51D  LEU*     3.3    14.9    -      -       +      +
     52D  GLU*     2.7    52.8    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLN 49 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     45D  LYS      2.7    27.9    +      -       -      +
     46D  LYS*     2.8    15.7    -      -       -      +
     47D  LEU      3.2     0.4    -      -       -      -
     48D  GLN*     1.3    84.8    -      -       -      +
     50D  GLU*     1.3    55.5    +      -       -      +
     52D  GLU*     2.9     6.5    +      -       -      -
     53D  PHE*     2.4    71.1    +      -       +      -
----------------------------------------------------------
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Residues in contact with GLU 50 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     46D  LYS      3.4    13.0    -      -       -      +
     47D  LEU*     2.9    45.7    -      -       -      +
     49D  GLN*     1.3    76.0    -      -       -      +
     51D  LEU*     1.3    57.2    +      -       -      +
     53D  PHE*     3.6    15.6    -      -       +      -
     54D  LEU*     2.8    41.8    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 51 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     25C  LEU*     4.0    30.1    -      -       +      +
     28C  ILE*     3.6    45.3    -      -       +      -
     29C  GLU*     4.3     6.7    -      -       +      +
     32C  GLN*     3.6    23.7    -      -       +      +
     47D  LEU      3.5     4.4    +      -       -      +
     48D  GLN*     3.3    19.5    -      -       +      +
     50D  GLU*     1.3    83.6    -      -       -      +
     52D  GLU*     1.3    71.1    +      -       +      +
     54D  LEU*     3.6     1.8    -      -       -      +
     55D  GLU*     2.9    33.8    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLU 52 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     48D  GLN*     2.7    35.0    +      -       +      +
     49D  GLN*     3.7     3.3    -      -       -      +
     51D  LEU*     1.3    78.4    -      -       +      +
     53D  PHE*     1.3    67.0    +      -       +      +
     55D  GLU*     3.4    22.9    -      -       -      +
     56D  VAL*     3.1    28.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with PHE 53 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     49D  GLN*     2.4    67.6    +      -       +      +
     50D  GLU*     3.6    13.0    -      -       +      -
     52D  GLU*     1.3    73.3    -      -       +      +
     54D  LEU*     1.3    59.7    +      -       +      +
     56D  VAL*     3.2    20.4    -      -       +      +
     57D  GLN*     3.1    21.8    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 54 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     32C  GLN*     3.9    21.3    -      -       +      +
     36C  ASN*     3.5    30.3    -      -       -      +
     43C  ARG*     5.1     8.3    -      -       -      +
     50D  GLU*     2.8    28.5    +      -       +      +
     51D  LEU*     3.8     3.1    -      -       -      +
     53D  PHE*     1.3    76.0    -      -       +      +
     55D  GLU*     1.3    63.5    +      -       -      +
     56D  VAL      3.3     0.2    -      -       -      -
     57D  GLN*     3.2    21.8    +      -       +      +
     58D  GLU*     3.2    28.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 55 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     32C  GLN*     4.1     9.9    -      -       -      +
     51D  LEU*     2.9    21.9    +      -       +      +
     52D  GLU*     3.2    29.0    +      -       -      +
     54D  LEU*     1.3    78.3    -      -       -      +
     56D  VAL*     1.3    60.4    +      -       -      +
     58D  GLU*     3.2    24.8    +      -       +      +
     59D  GLU*     4.0     5.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 56 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     52D  GLU      3.1    14.4    +      -       -      +
     53D  PHE*     3.2    22.9    -      -       +      +
     55D  GLU*     1.3    72.3    -      -       -      +
     57D  GLN*     1.3    63.8    +      -       -      +
     58D  GLU      3.1     5.4    -      -       -      -
     59D  GLU*     3.6    14.0    +      -       +      +
     60D  TYR*     3.2    22.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 57 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     39C  SER*     5.9     0.2    -      -       -      -
     43C  ARG*     4.6    17.5    +      -       -      +
     53D  PHE      3.1    21.2    +      -       -      +
     54D  LEU*     3.2    31.3    +      -       +      +
     56D  VAL*     1.3    82.6    -      -       -      +
     58D  GLU*     1.3    63.4    +      -       -      +
     60D  TYR*     3.3    53.5    -      -       -      +
     61D  ILE*     3.3    19.2    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 58 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     32C  GLN*     2.8    26.2    +      -       -      +
     35C  VAL*     3.3    39.6    -      -       +      +
     36C  ASN*     4.3     5.4    +      -       -      +
     39C  SER*     4.0    14.7    +      -       -      -
     54D  LEU*     3.2    13.0    +      -       -      +
     55D  GLU*     3.3    15.7    -      -       +      +
     56D  VAL      3.1     0.6    -      -       -      -
     57D  GLN*     1.3    77.9    -      -       -      +
     59D  GLU*     1.3    65.6    +      -       +      +
     60D  TYR      3.3     0.2    +      -       -      -
     61D  ILE*     3.4     4.8    -      -       -      +
     62D  LYS*     3.1    36.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLU 59 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     55D  GLU      4.0     5.5    +      -       -      +
     56D  VAL*     3.6    14.8    +      -       +      +
     58D  GLU*     1.3    76.5    -      -       +      +
     60D  TYR*     1.3    64.3    +      -       -      +
     61D  ILE      3.5     0.2    -      -       -      -
     62D  LYS*     4.4     7.0    -      -       +      -
     63D  ASP*     3.1    27.4    +      -       +      +
----------------------------------------------------------
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Residues in contact with TYR 60 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     43C  ARG*     6.2     0.4    -      -       -      -
     56D  VAL      3.2     9.4    +      -       -      +
     57D  GLN*     3.3    52.9    -      -       -      +
     59D  GLU*     1.3    79.1    -      -       -      +
     61D  ILE*     1.3    66.6    +      -       +      +
     63D  ASP*     4.2     0.9    -      -       -      +
     64D  GLU*     3.2    41.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 61 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     39C  SER*     4.0    17.7    -      -       -      +
     42C  LEU*     4.1     6.3    -      -       +      -
     43C  ARG*     3.6    50.5    -      -       +      +
     46C  GLN*     3.4    15.9    -      -       -      +
     57D  GLN      3.3    17.9    -      -       -      +
     58D  GLU*     3.4     8.7    -      -       -      +
     60D  TYR*     1.3    80.2    -      -       +      +
     62D  LYS*     1.3    66.4    +      -       +      +
     64D  GLU*     2.8     9.1    +      -       -      +
     65D  GLN*     2.5    54.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 62 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     42C  LEU*     3.9    19.8    -      -       +      +
     58D  GLU*     3.1    26.5    +      -       +      +
     59D  GLU*     4.4     4.3    -      -       -      -
     61D  ILE*     1.3    81.3    -      -       +      +
     63D  ASP*     1.3    60.3    +      -       -      +
     65D  GLN*     3.4    26.9    -      -       -      +
     66D  LYS*     3.2    39.6    +      -       +      +
----------------------------------------------------------
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Residues in contact with ASP 63 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     59D  GLU*     3.1    23.3    +      -       +      +
     60D  TYR      4.3     0.9    -      -       -      +
     62D  LYS*     1.3    75.3    -      -       -      +
     64D  GLU*     1.3    61.5    +      -       -      +
     66D  LYS*     4.3     3.7    -      -       -      +
     67D  ASN*     2.9    41.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 64 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     46C  GLN*     3.2    24.0    +      -       -      +
     60D  TYR*     3.2    44.5    +      -       -      +
     61D  ILE*     2.8     7.8    +      -       -      +
     63D  ASP*     1.3    77.0    -      -       -      +
     65D  GLN*     1.3    59.2    +      -       -      +
     67D  ASN*     3.4     9.7    +      -       -      +
     68D  LEU*     3.0    27.7    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLN 65 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     42C  LEU*     3.2    50.4    -      -       -      +
     46C  GLN*     3.3    31.3    +      -       +      +
     61D  ILE*     2.5    33.9    +      -       -      +
     62D  LYS*     3.4    28.9    +      -       -      +
     64D  GLU*     1.3    73.1    -      -       -      +
     66D  LYS*     1.3    66.2    +      -       +      +
     68D  LEU*     3.7     2.9    -      -       -      +
     69D  LYS*     2.8    28.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 66 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     62D  LYS*     3.2    27.9    +      -       -      +
     63D  ASP*     4.3     5.4    -      -       -      +
     64D  GLU      3.3     0.4    -      -       -      -
     65D  GLN*     1.3    83.3    -      -       +      +
     67D  ASN*     1.3    58.9    +      -       -      +
     69D  LYS*     3.3    24.0    -      -       +      +
     70D  LYS*     2.9    45.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with ASN 67 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     63D  ASP*     2.9    35.9    +      -       -      +
     64D  GLU*     3.6     9.0    -      -       -      +
     66D  LYS*     1.3    74.7    -      -       -      +
     68D  LEU*     1.3    51.3    +      -       -      +
     70D  LYS*     2.8    27.6    +      -       -      +
     71D  GLU*     2.6    47.0    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 68 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     46C  GLN*     3.7    29.8    -      -       +      +
     49C  ARG*     5.3     2.7    -      -       +      -
     50C  ASN*     3.6    40.6    -      -       +      +
     53C  ASN*     3.5    30.5    -      -       +      +
     64D  GLU*     3.0    16.0    +      -       +      +
     65D  GLN      3.9     3.8    -      -       -      +
     67D  ASN*     1.3    78.3    -      -       -      +
     69D  LYS*     1.3    52.5    +      -       -      +
     71D  GLU*     3.4    21.5    -      -       +      +
     72D  PHE*     2.5    35.1    +      -       +      +
----------------------------------------------------------
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Residues in contact with LYS 69 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     49C  ARG*     3.3    45.4    +      -       -      +
     65D  GLN      2.8    23.4    +      -       -      +
     66D  LYS*     3.3    26.9    -      -       +      +
     67D  ASN      3.1     0.2    -      -       -      -
     68D  LEU*     1.3    72.7    -      -       -      +
     70D  LYS*     1.3    54.9    +      -       +      +
     72D  PHE*     3.1     4.6    +      -       -      +
     73D  LEU*     2.7    55.9    +      -       +      +
----------------------------------------------------------
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Residues in contact with LYS 70 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     66D  LYS*     2.9    46.8    +      -       -      +
     67D  ASN*     2.8    25.5    +      -       -      +
     69D  LYS*     1.3    77.6    -      -       +      +
     71D  GLU*     1.3    59.1    +      -       +      +
     73D  LEU*     3.7    15.7    -      -       +      +
     74D  HIS*     2.8    27.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 71 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     53C  ASN*     4.3     7.9    +      -       -      +
     67D  ASN*     2.6    25.8    +      -       -      +
     68D  LEU*     3.1    35.7    +      -       +      +
     70D  LYS*     1.3    73.0    -      -       +      +
     72D  PHE*     1.3    58.8    +      -       -      +
     74D  HIS*     3.3    10.2    +      -       -      +
     75D  ALA*     2.8    25.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with PHE 72 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     49C  ARG*     3.4    51.8    -      -       +      +
     52C  LEU*     3.6    48.9    -      -       +      -
     53C  ASN*     3.6    18.1    -      -       +      -
     56C  VAL*     4.9     5.6    -      -       +      -
     68D  LEU*     2.5    20.4    +      -       +      +
     69D  LYS*     3.1     5.4    +      -       -      +
     71D  GLU*     1.3    72.7    -      -       -      +
     73D  LEU*     1.3    62.8    +      -       +      +
     75D  ALA*     3.0     7.6    +      -       +      +
     76D  GLN*     3.0    56.1    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 73 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     49C  ARG*     4.6    11.4    -      -       -      +
     69D  LYS*     2.7    42.9    +      -       +      +
     70D  LYS*     3.7    17.0    -      -       +      +
     72D  PHE*     1.3    74.6    -      -       +      +
     74D  HIS*     1.3    61.8    +      -       -      +
     76D  GLN*     3.2    27.9    +      -       +      +
     77D  GLU*     3.5    11.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with HIS 74 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     57C  ARG*     5.0     5.5    +      -       -      -
     70D  LYS      2.8    18.7    +      -       -      +
     71D  GLU*     3.4    11.3    +      -       -      +
     73D  LEU*     1.3    75.2    -      -       -      +
     75D  ALA*     1.3    63.8    +      -       -      +
     77D  GLU*     3.3    20.6    +      -       +      +
     78D  GLU*     3.1    38.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 75 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     53C  ASN*     3.4    25.4    -      -       -      +
     56C  VAL*     3.7    19.3    -      -       +      +
     57C  ARG*     5.2     5.6    -      -       -      +
     71D  GLU      2.8    10.9    +      -       -      +
     72D  PHE*     3.0    13.8    +      -       +      +
     74D  HIS*     1.3    75.5    +      -       -      +
     76D  GLN*     1.3    65.0    +      -       -      +
     78D  GLU*     3.2    26.0    -      -       +      +
     79D  VAL*     3.3    14.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 76 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     56C  VAL*     4.7     9.5    -      -       -      +
     72D  PHE*     3.0    53.8    +      -       +      +
     73D  LEU*     3.3    22.0    -      -       +      +
     74D  HIS      3.2     0.2    -      -       -      -
     75D  ALA*     1.3    76.2    -      -       -      +
     77D  GLU*     1.3    66.6    +      -       +      +
     79D  VAL*     3.3    14.2    -      -       -      +
     80D  LYS*     3.2    33.1    +      -       +      +
    118D  THR*     5.8     3.5    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 77 (chain D). Click here for Legend to table.
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                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     73D  LEU      3.5    11.3    +      -       -      +
     74D  HIS*     3.3    16.7    +      -       +      +
     75D  ALA      3.3     0.4    -      -       -      -
     76D  GLN*     1.3    77.0    -      -       -      +
     78D  GLU*     1.3    60.7    +      -       -      +
     80D  LYS*     3.5     8.8    +      -       -      +
     81D  ARG*     2.8    30.9    +      -       -      +
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Residues in contact with GLU 78 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     56C  VAL*     6.1     0.7    -      -       +      -
     57C  ARG*     3.6    39.2    +      -       -      +
     60C  ARG*     5.6     3.4    +      -       +      -
     74D  HIS*     3.1    37.9    -      -       -      +
     75D  ALA*     3.2    13.2    -      -       +      +
     76D  GLN      3.2     0.4    -      -       -      -
     77D  GLU*     1.3    77.1    -      -       -      +
     79D  VAL*     1.3    61.6    +      -       +      +
     81D  ARG*     2.8    50.6    +      -       -      +
     82D  ILE*     3.2    16.3    +      -       +      +
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Residues in contact with VAL 79 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     56C  VAL*     3.7    44.9    -      -       +      +
     59C  LEU*     4.8    15.3    -      -       +      -
     60C  ARG*     5.2     4.7    -      -       +      +
     75D  ALA      3.6     7.4    -      -       -      +
     76D  GLN*     3.3    25.8    -      -       -      +
     78D  GLU*     1.3    79.2    -      -       +      +
     80D  LYS*     1.3    67.8    +      -       +      +
     82D  ILE*     3.0    27.6    +      -       -      +
    116D  LEU*     4.9    19.7    -      -       +      +
    117D  SER*     6.5     0.4    -      -       -      -
    118D  THR*     5.4     8.7    -      -       +      -
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Residues in contact with LYS 80 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     76D  GLN*     3.2    23.1    +      -       +      +
     77D  GLU*     3.9    10.5    -      -       -      +
     78D  GLU      3.1     0.8    -      -       -      -
     79D  VAL*     1.3    82.6    -      -       +      +
     81D  ARG*     1.3    65.2    +      -       -      +
     82D  ILE      3.9     4.1    -      -       -      +
     84D  SER*     5.1     2.3    +      -       -      -
    116D  LEU*     6.2     4.0    -      -       +      +
    118D  THR*     5.0    16.5    +      -       +      +
    140D  VAL*     6.1     3.0    -      -       -      +
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Residues in contact with ARG 81 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     60C  ARG*     4.4    13.7    -      -       -      +
     77D  GLU      2.8    14.5    +      -       -      +
     78D  GLU*     2.8    28.6    +      -       -      +
     80D  LYS*     1.3    79.3    -      -       -      +
     82D  ILE*     1.3    84.5    +      -       -      +
     83D  GLN      3.3     0.9    -      -       -      -
     84D  SER*     2.9    36.8    +      -       -      -
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Residues in contact with ILE 82 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     59C  LEU*     6.0     4.0    -      -       +      -
     60C  ARG*     3.3    37.5    -      -       -      +
     63C  LEU*     3.6    26.9    -      -       +      -
     78D  GLU*     3.2    27.6    +      -       -      +
     79D  VAL*     3.0    22.2    -      -       -      +
     80D  LYS*     3.9     4.6    -      -       -      +
     81D  ARG*     1.3   110.5    -      -       -      +
     83D  GLN*     1.3    72.7    +      -       +      +
     84D  SER      3.4     1.1    -      -       -      -
    116D  LEU*     4.9     8.4    -      -       +      +
    140D  VAL*     5.1     2.8    -      -       -      +
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il