Contacts of the helix formed by residues 1070 - 1121 (chain A) in PDB entry 5UAK
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ARG1070 (chain A).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
508A PHE* 3.1 69.0 + - + +
509A GLY* 3.1 24.8 - - - +
564A LYS* 5.1 5.6 - - - +
1065A LEU* 3.3 26.6 + - + +
1068A PHE* 3.8 17.9 - - + -
1069A GLY* 1.3 80.0 - - - +
1071A GLN* 1.3 61.6 + - - +
1072A PRO* 3.4 5.6 - - - -
1073A TYR* 3.3 42.6 + - + +
1074A PHE* 3.4 15.2 + - + -
----------------------------------------------------------
Back to top of page
Residues in contact with GLN1071 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
165A LEU* 4.6 15.6 - - + +
166A LYS* 3.4 41.9 - - - +
1065A LEU* 3.9 13.4 - - + +
1069A GLY* 3.5 4.0 - - - -
1070A ARG* 1.3 74.6 - - - +
1072A PRO* 1.4 73.9 - - + +
1074A PHE* 3.6 4.2 + - - +
1075A GLU* 2.9 48.7 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with PRO1072 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1069A GLY 4.4 5.6 - - - +
1070A ARG* 3.4 7.4 - - - -
1071A GLN* 1.4 100.6 - - + +
1073A TYR* 1.3 49.6 + - - +
1075A GLU* 3.7 9.6 - - + +
1076A THR* 2.7 47.9 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with TYR1073 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
498A MET* 4.2 17.4 - - + +
504A GLU* 3.3 25.0 + - - +
508A PHE* 4.6 11.0 - + - -
1070A ARG* 3.3 45.7 + - - +
1071A GLN 3.3 0.2 - - - -
1072A PRO* 1.3 79.8 - - - +
1074A PHE* 1.3 79.4 + + - +
1076A THR* 2.8 20.0 + - - -
1077A LEU* 2.9 48.2 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with PHE1074 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
161A TYR* 4.0 13.0 - - + +
165A LEU* 5.2 2.2 - - + -
496A TRP* 4.1 23.6 - + - -
498A MET* 4.8 9.9 - - + -
508A PHE* 4.3 17.9 - + - -
1054A HIS* 3.7 16.8 - + - -
1057A THR* 5.8 0.4 - - - -
1058A SER* 3.8 38.8 - - - -
1061A GLY 5.7 0.9 - - - -
1065A LEU* 3.5 44.4 - - + -
1070A ARG 3.4 6.1 + - - +
1071A GLN* 4.0 6.1 - - - +
1072A PRO 3.4 0.4 - - - -
1073A TYR* 1.3 97.9 - + - +
1075A GLU* 1.3 57.0 + - - +
1077A LEU* 3.7 4.4 - - - -
1078A PHE* 2.8 31.5 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU1075 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
161A TYR* 4.1 21.8 - - + -
162A LYS* 3.2 44.2 + - + +
165A LEU* 3.9 15.4 - - + +
166A LYS* 5.4 2.4 - - - -
1071A GLN* 2.9 36.5 + - - +
1072A PRO* 3.7 9.6 - - + +
1074A PHE* 1.3 77.4 - - - +
1076A THR* 1.3 61.2 + - + +
1078A PHE* 3.4 2.6 + - - +
1079A HIS* 3.1 41.8 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with THR1076 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
47A ASP* 5.4 3.6 - - - +
1072A PRO* 2.7 33.3 + - + +
1073A TYR* 2.8 20.4 + - - -
1075A GLU* 1.3 73.2 - - + +
1077A LEU* 1.3 58.9 + - - +
1079A HIS* 3.5 25.0 + - + +
1080A LYS* 3.8 6.2 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1077 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1054A HIS* 3.5 29.8 - - + +
1073A TYR* 2.9 51.8 + - + +
1074A PHE* 3.8 4.5 - - - +
1076A THR* 1.3 73.8 + - - +
1078A PHE* 1.3 64.9 + - - +
1080A LYS* 3.3 27.3 + - + +
1081A ALA* 3.6 6.3 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with PHE1078 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
157A PHE* 4.0 16.4 - - + -
158A SER* 4.2 2.2 - - - -
161A TYR* 3.4 60.6 - + + -
184A LEU* 6.2 1.1 - - + -
1051A ILE* 3.9 32.5 - - + -
1054A HIS* 3.6 19.9 - - + -
1055A LEU* 4.5 9.9 - - + -
1074A PHE 2.8 20.3 + - - +
1075A GLU 3.5 4.5 - - - +
1076A THR 3.4 0.2 - - - -
1077A LEU* 1.3 77.0 - - - +
1079A HIS* 1.3 69.2 + + - +
1081A ALA* 3.3 16.9 + - + +
1082A LEU* 3.3 39.3 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with HIS1079 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46A ALA* 3.2 24.5 - - + +
47A ASP* 3.2 33.7 + - - +
50A SER* 4.4 5.1 - - - -
158A SER* 3.3 23.6 + - - -
161A TYR* 6.2 1.1 - + - -
162A LYS* 5.6 7.4 - - - -
1075A GLU* 3.1 32.0 + - + +
1076A THR* 3.7 15.7 - - + +
1077A LEU 3.3 0.8 - - - -
1078A PHE* 1.3 78.7 - + - +
1080A LYS* 1.3 55.1 + - - +
1082A LEU* 3.1 12.1 + - - +
1083A ASN* 2.8 47.1 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LYS1080 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1076A THR 3.8 6.4 + - - +
1077A LEU* 3.3 19.6 + - + +
1079A HIS* 1.3 76.7 - - - +
1081A ALA* 1.3 58.6 + - - +
1083A ASN* 3.9 10.3 - - + +
1084A LEU* 3.1 47.8 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1081 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1047A GLY 5.0 1.6 - - - +
1050A PRO* 4.4 14.4 - - + +
1051A ILE* 3.4 43.6 - - + +
1054A HIS* 5.3 4.7 - - + -
1077A LEU* 3.6 6.0 + - + +
1078A PHE* 3.3 17.8 + - + +
1079A HIS 3.2 0.4 - - - -
1080A LYS* 1.3 76.2 - - - +
1082A LEU* 1.3 62.0 + - - +
1084A LEU* 4.0 9.0 + - - +
1085A HIS* 3.6 11.6 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1082 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46A ALA* 3.7 28.3 - - + -
154A ILE* 4.6 16.4 - - + +
157A PHE* 4.7 17.5 - - + -
158A SER* 4.1 13.2 - - - -
1051A ILE* 4.1 20.2 - - + -
1078A PHE* 3.3 43.9 + - + +
1079A HIS* 3.1 9.2 + - - +
1081A ALA* 1.3 75.6 - - - +
1083A ASN* 1.3 54.9 + - - +
1085A HIS* 3.0 6.3 + - - +
1086A THR* 2.8 40.6 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASN1083 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40A ILE* 3.3 25.5 - - + +
44A ASP 4.4 0.2 - - - +
45A SER* 4.2 21.3 + - - -
46A ALA 4.3 5.7 + - - +
47A ASP* 5.6 2.4 + - - -
1079A HIS* 2.8 38.3 + - - +
1080A LYS* 3.5 9.4 + - + +
1082A LEU* 1.3 73.8 - - - +
1084A LEU* 1.3 53.7 + - - +
1086A THR* 4.4 1.9 + - - +
1087A ALA* 2.8 37.0 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1084 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34A LEU* 5.0 30.1 - - + +
1047A GLY* 6.1 1.7 - - - -
1050A PRO* 5.7 10.5 - - + -
1080A LYS* 3.1 42.6 + - + +
1081A ALA* 4.2 8.1 - - - +
1083A ASN* 1.3 76.1 - - + +
1085A HIS* 1.3 60.6 + - - +
1087A ALA* 4.1 4.2 - - + +
1088A ASN* 3.4 23.6 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with HIS1085 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
153A ARG* 4.0 26.9 + - - -
188A LEU* 5.8 5.6 - - + -
1044A GLU* 3.9 15.2 + - - -
1047A GLY* 3.4 35.1 + - - +
1048A ARG* 4.1 13.0 + - + +
1051A ILE* 4.0 14.4 - - + +
1081A ALA 3.6 11.2 + - - +
1082A LEU* 3.0 8.8 + - - +
1084A LEU* 1.3 78.3 - - - +
1086A THR* 1.3 55.7 + - - +
1088A ASN* 3.5 4.9 + - - +
1089A TRP* 2.8 69.9 + + - +
----------------------------------------------------------
Back to top of page
Residues in contact with THR1086 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40A ILE* 4.2 23.6 - - + -
44A ASP* 4.8 9.9 - - + +
150A MET* 5.2 7.0 - - + -
153A ARG* 5.2 3.7 + - - +
154A ILE* 3.6 39.7 - - + +
1082A LEU* 2.8 24.5 + - - +
1083A ASN* 3.9 3.8 - - - -
1085A HIS* 1.3 71.0 + - - +
1087A ALA* 1.3 60.4 + - - +
1089A TRP* 4.5 4.3 - - - -
1090A PHE* 2.8 44.0 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1087 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37A ILE* 4.0 16.6 - - + +
38A TYR 4.2 16.4 - - - +
39A GLN* 4.9 2.5 - - - -
40A ILE* 3.6 23.9 - - + +
1083A ASN 2.8 23.0 + - - +
1084A LEU* 4.1 5.2 - - + +
1086A THR* 1.3 73.3 - - - +
1088A ASN* 1.3 62.0 + - - +
1090A PHE* 4.5 5.5 - - - +
1091A LEU* 4.0 12.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASN1088 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34A LEU* 4.7 7.4 - - + +
37A ILE* 3.2 32.2 - - + +
1040A LEU* 3.8 14.1 + - - +
1043A LEU* 3.2 22.0 + - - +
1044A GLU* 3.0 51.0 - - - +
1047A GLY* 5.8 1.1 - - - -
1084A LEU 3.4 17.0 + - - +
1085A HIS* 3.7 6.1 + - - +
1086A THR 3.2 0.6 - - - -
1087A ALA* 1.3 78.7 - - - +
1089A TRP* 1.3 63.0 + - - +
1091A LEU* 3.6 15.8 + - - +
1092A TYR 3.9 2.8 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with TRP1089 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
150A MET* 3.3 35.3 - - + +
153A ARG* 4.3 15.9 - - - +
188A LEU* 4.9 14.1 - - + -
189A ASN* 5.8 3.1 - - - -
192A ASP* 5.3 2.5 + - + -
193A GLU* 4.3 21.7 - - + +
1044A GLU* 3.2 52.0 - - + -
1048A ARG* 4.7 14.4 - - - -
1085A HIS* 2.8 51.8 + + + +
1086A THR* 4.1 3.4 - - - +
1088A ASN* 1.3 71.3 - - - +
1090A PHE* 1.3 61.0 + - - +
1092A TYR* 2.9 33.2 + + + +
1093A LEU* 3.9 9.6 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with PHE1090 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7A GLU* 6.3 2.7 - - + -
19A TRP* 5.9 8.5 - + - -
38A TYR* 5.8 8.5 - + - -
40A ILE* 5.8 3.6 - - + -
41A PRO* 4.6 28.5 - - + -
44A ASP* 5.1 6.3 - - - -
143A PHE* 3.8 31.2 - + - -
147A HIS* 3.8 27.4 - + + -
150A MET* 5.2 9.4 - - + -
1086A THR* 2.8 31.4 + - + +
1087A ALA* 4.5 5.4 - - - +
1089A TRP* 1.3 75.9 - - - +
1091A LEU* 1.3 67.8 + - + +
1092A TYR 3.3 0.9 + - - -
1093A LEU* 3.4 23.5 + - + +
1094A SER* 3.6 15.3 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1091 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19A TRP* 4.9 2.0 - - + -
23A ILE* 3.7 35.7 - - + -
37A ILE* 4.3 22.4 - - + -
38A TYR* 3.6 34.3 - - + +
1040A LEU* 3.8 23.6 - - + -
1087A ALA 4.0 9.6 + - - +
1088A ASN 3.6 10.9 + - - +
1089A TRP 3.2 1.0 - - - -
1090A PHE* 1.3 83.6 - - + +
1092A TYR* 1.3 60.8 + - - +
1094A SER* 2.6 30.7 + - - +
1095A THR* 3.2 12.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with TYR1092 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1033A PHE* 6.2 1.8 - + - -
1037A SER* 3.8 35.9 - - - -
1040A LEU* 3.6 23.2 - - + +
1041A LYS* 4.1 26.5 + - + +
1044A GLU* 3.2 26.0 - - - +
1089A TRP* 2.9 21.7 + + + +
1091A LEU* 1.3 74.8 - - - +
1093A LEU* 1.3 65.4 + - + +
1095A THR* 2.9 18.6 + - - -
1096A LEU* 3.0 46.5 + - + +
1151A ILE* 5.5 6.8 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1093 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143A PHE* 3.8 19.7 - - + -
146A HIS* 3.7 48.2 - - + +
147A HIS* 5.0 0.9 - - - +
150A MET* 3.5 34.3 - - + -
193A GLU* 5.8 3.8 - - + -
1089A TRP* 3.9 9.8 + - + +
1090A PHE* 3.4 16.6 + - + +
1092A TYR* 1.3 84.3 - - + +
1094A SER* 1.3 53.3 + - - +
1096A LEU* 3.7 11.4 - - + +
1097A ARG* 2.8 39.7 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with SER1094 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
17A PHE* 4.3 10.7 - - - +
19A TRP* 3.8 26.3 + - - -
20A THR* 3.4 13.2 - - - +
143A PHE* 4.2 12.5 - - - -
1090A PHE* 3.6 12.7 + - - -
1091A LEU* 2.6 40.5 + - - +
1093A LEU* 1.3 76.4 - - - +
1095A THR* 1.3 64.6 + - - +
1097A ARG* 3.8 4.7 - - - +
1098A TRP* 3.3 15.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with THR1095 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20A THR* 3.9 8.3 - - + -
23A ILE* 3.6 28.5 - - + -
24A LEU* 4.0 18.4 - - + -
1033A PHE* 3.4 23.1 - - - -
1036A THR* 5.1 6.3 - - - +
1037A SER* 4.9 4.7 + - - -
1040A LEU* 4.3 10.2 - - + +
1091A LEU 3.2 13.6 + - - +
1092A TYR* 2.9 24.4 + - - -
1094A SER* 1.3 79.1 + - - +
1096A LEU* 1.3 65.5 + - - +
1098A TRP* 3.2 6.7 + - - +
1099A PHE 3.1 17.3 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1096 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1033A PHE* 4.0 17.7 - - + -
1092A TYR* 3.0 45.4 + - + +
1093A LEU* 3.8 12.3 - - + +
1095A THR* 1.3 80.9 + - - +
1097A ARG* 1.3 82.8 + - - +
1099A PHE* 3.3 4.2 + - + +
1100A GLN* 3.0 43.2 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG1097 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
17A PHE* 3.8 20.2 - - + -
139A HIS* 3.0 52.4 + - - -
142A ILE* 3.2 28.5 - - - +
143A PHE* 3.6 26.6 - - + +
146A HIS* 5.4 8.1 + - - -
1093A LEU* 2.8 25.4 + - + +
1094A SER 3.8 4.0 - - - +
1096A LEU* 1.3 87.4 - - - +
1098A TRP* 1.3 55.8 + - - +
1100A GLN* 3.4 34.8 + - - +
1101A MET* 2.8 35.0 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with TRP1098 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16A PHE* 3.2 39.0 - + + -
17A PHE* 4.3 8.0 - - + -
20A THR* 3.6 27.7 + - + +
21A ARG* 3.6 41.0 - - + +
24A LEU* 4.0 26.4 - - + +
1029A LEU* 5.3 5.9 - - + +
1032A TYR* 5.7 1.8 - - - -
1033A PHE* 5.8 1.8 - + - -
1094A SER 3.3 10.7 + - - +
1095A THR 3.2 10.5 + - - +
1097A ARG* 1.3 75.0 - - - +
1099A PHE* 1.3 64.2 + - - +
1101A MET* 4.1 11.2 - - + -
1102A ARG* 2.9 64.0 + - + +
1105A MET* 5.3 6.7 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with PHE1099 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1029A LEU* 3.4 32.5 - - + +
1030A ARG* 3.9 20.6 - - + -
1033A PHE* 3.4 54.3 - + + -
1095A THR 3.1 4.6 + - - -
1096A LEU* 3.5 8.3 - - + +
1098A TRP* 1.3 79.7 - - - +
1100A GLN* 1.3 74.6 + - - +
1102A ARG* 3.9 3.1 - - - +
1103A ILE* 2.9 45.7 + - + +
1147A VAL* 3.6 32.5 - - + -
1148A ASN* 6.0 0.2 - - - -
1151A ILE* 4.0 14.8 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with GLN1100 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
139A HIS* 3.3 21.8 + - + -
1096A LEU* 3.0 30.1 + - + +
1097A ARG* 3.6 36.7 + - - +
1099A PHE* 1.3 97.0 - - - +
1101A MET* 1.3 62.6 + - - +
1103A ILE* 3.4 25.1 - - - +
1104A GLU* 4.0 3.1 + - - +
1144A GLN* 4.5 18.1 + - - +
1148A ASN* 4.6 21.0 - - - +
1151A ILE* 6.0 0.8 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with MET1101 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15A LEU* 3.7 20.2 - - + +
16A PHE* 3.5 37.5 - - + -
17A PHE* 4.4 13.7 - - + -
135A THR* 4.3 12.4 - - + +
136A LEU* 4.5 12.3 - - + -
139A HIS* 3.5 37.5 - - + -
140A PRO* 5.2 2.2 - - - -
1097A ARG 2.8 24.6 + - - +
1098A TRP* 3.5 16.2 - - + +
1100A GLN* 1.3 78.8 - - - +
1102A ARG* 1.3 63.0 + - - +
1104A GLU* 3.7 3.6 + - - +
1105A MET* 3.5 29.0 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG1102 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21A ARG* 4.1 23.3 - - - +
1025A ALA* 6.0 3.6 - - - +
1028A MET* 5.3 11.5 - - - +
1029A LEU* 3.6 41.0 - - + +
1032A TYR* 5.5 5.5 - - - -
1098A TRP* 2.9 43.8 + - + +
1099A PHE* 4.2 2.2 - - - +
1101A MET* 1.3 74.7 - - - +
1103A ILE* 1.3 60.6 + - - +
1105A MET* 3.0 15.5 + - + -
1106A ILE* 2.8 45.1 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE1103 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1026A PHE* 3.9 22.0 - - + -
1029A LEU* 5.3 1.5 - - + +
1099A PHE* 2.9 33.6 + - + +
1100A GLN* 3.4 29.2 - - - +
1102A ARG* 1.3 76.7 - - - +
1104A GLU* 1.3 64.2 + - - +
1106A ILE* 3.7 13.4 + - + +
1107A PHE* 3.4 17.5 + - - +
1143A LEU* 4.9 7.7 - - + +
1144A GLN* 4.8 20.6 - - + +
1147A VAL* 3.5 44.2 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with GLU1104 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
131A PHE* 5.0 5.1 - - + +
134A ARG* 4.5 9.0 + - - +
135A THR* 3.2 33.7 + - + +
138A LEU* 5.7 4.3 - - - +
139A HIS* 3.1 23.6 + - - +
1100A GLN 4.2 7.0 - - - +
1101A MET 3.7 7.7 + - - +
1102A ARG 3.2 0.6 - - - -
1103A ILE* 1.3 78.3 - - - +
1105A MET* 1.3 55.5 + - - +
1106A ILE 3.2 0.2 - - - -
1107A PHE* 3.1 12.1 + - + +
1108A VAL* 2.8 37.3 + - + +
1140A MET* 4.2 21.1 - - + +
1144A GLN* 4.5 18.7 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with MET1105 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16A PHE* 4.4 28.7 - - + -
135A THR* 4.8 11.0 - - + -
1098A TRP* 5.3 8.7 - - + -
1101A MET* 3.5 22.9 + - - +
1102A ARG* 3.0 16.2 + - + +
1104A GLU* 1.3 74.6 - - - +
1106A ILE* 1.3 63.4 + - + +
1108A VAL* 3.6 23.2 - - + +
1109A ILE* 3.6 17.0 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE1106 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1022A VAL* 3.8 26.5 - - + +
1025A ALA* 4.4 23.6 - - + +
1026A PHE* 3.6 32.1 - - + -
1029A LEU* 4.4 17.9 - - + -
1102A ARG* 2.8 40.3 + - + +
1103A ILE* 3.7 15.5 - - + +
1104A GLU 3.2 0.2 - - - -
1105A MET* 1.3 75.9 - - - +
1107A PHE* 1.3 60.9 + - - +
1109A ILE* 3.4 21.7 - - + +
1110A PHE 3.9 1.7 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with PHE1107 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
131A PHE* 6.3 0.2 - + - -
1022A VAL* 5.5 0.4 - - - -
1026A PHE* 5.1 3.4 - + + -
1103A ILE 3.4 10.1 + - - +
1104A GLU* 3.1 15.1 + - + +
1106A ILE* 1.3 79.4 - - - +
1108A VAL* 1.3 61.7 + - + +
1109A ILE 3.3 0.2 - - - -
1110A PHE* 2.9 27.6 + + - +
1111A PHE* 2.8 43.6 + + + -
1136A ALA* 3.5 12.6 - - + -
1139A ILE* 3.5 33.9 - - + -
1140A MET* 3.6 42.4 - - + -
1143A LEU* 3.4 31.2 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with VAL1108 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128A CYS 4.4 2.0 - - - +
131A PHE* 4.0 30.5 - - + -
132A ILE* 4.0 21.5 - - + +
135A THR* 5.8 1.8 - - - +
1104A GLU* 2.8 21.9 + - + +
1105A MET* 3.6 23.3 - - + +
1107A PHE* 1.3 76.5 - - + +
1109A ILE* 1.3 66.0 + - + +
1111A PHE* 3.7 7.1 - - + -
1112A ILE* 2.8 52.7 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE1109 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1021A PRO* 6.5 0.4 - - + -
1022A VAL* 4.0 18.2 - - + -
1105A MET 3.6 14.8 - - - +
1106A ILE* 3.4 19.1 - - + +
1108A VAL* 1.3 80.2 - - + +
1110A PHE* 1.3 64.2 + - - +
1112A ILE* 4.0 10.1 - - + +
1113A ALA* 3.1 27.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with PHE1110 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1005A ILE* 4.2 19.7 - - + -
1008A VAL* 5.8 3.4 - - + -
1015A ILE* 3.7 19.5 - - + -
1018A ALA* 3.8 21.1 - - + -
1019A THR* 3.5 33.0 - - + -
1022A VAL* 3.9 25.6 - - + -
1106A ILE 4.0 4.3 - - - +
1107A PHE* 2.9 28.6 + + + +
1109A ILE* 1.3 82.6 - - - +
1111A PHE* 1.3 61.8 + - - +
1113A ALA* 3.3 4.9 + - - +
1114A VAL* 2.8 55.5 + - + +
1136A ALA* 5.8 6.3 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with PHE1111 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
127A LEU* 3.7 12.3 - - + -
128A CYS* 4.6 6.7 - - - -
131A PHE* 3.3 36.8 - + + -
1107A PHE* 2.8 34.4 + + + +
1108A VAL* 3.8 8.3 - - + +
1110A PHE* 1.3 73.8 - - - +
1112A ILE* 1.3 55.7 + - + +
1114A VAL* 3.3 4.8 + - + +
1115A THR* 2.7 64.2 + - + +
1133A LEU* 4.8 2.0 - - + -
1136A ALA* 3.5 37.9 - - + -
1137A MET* 3.4 37.2 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ILE1112 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128A CYS* 3.7 24.0 - - + -
132A ILE* 4.4 16.2 - - + -
1108A VAL* 2.8 45.4 + - + +
1109A ILE* 4.0 10.8 - - + +
1111A PHE* 1.3 72.9 - - + +
1113A ALA* 1.3 55.1 + - - +
1115A THR* 2.7 19.2 + - - -
1116A PHE* 2.8 52.8 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1113 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1018A ALA* 4.8 17.3 - - + -
1109A ILE 3.1 21.2 + - - +
1110A PHE* 3.5 6.3 - - - +
1112A ILE* 1.3 78.3 - - - +
1114A VAL* 1.3 57.1 + - - +
1116A PHE* 4.0 4.1 - - - +
1117A ILE* 3.0 34.5 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL1114 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1008A VAL* 4.9 1.8 - - + -
1012A GLN* 4.4 0.2 - - - +
1015A ILE* 4.0 23.1 - - + -
1018A ALA* 5.7 1.8 - - + -
1110A PHE* 2.8 58.0 + - + +
1111A PHE* 3.8 6.3 - - - +
1113A ALA* 1.3 72.1 - - + +
1115A THR* 1.3 60.3 + - + +
1117A ILE* 3.5 7.7 - - - +
1118A SER* 2.8 31.9 + - - +
1132A ILE* 3.8 28.0 - - + -
1133A LEU* 5.8 1.8 - - + -
1136A ALA* 4.4 15.7 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with THR1115 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124A GLY* 6.3 1.3 - - - -
127A LEU* 5.0 4.7 - - + -
128A CYS* 3.6 13.5 - - - -
1111A PHE* 2.7 60.0 + - + +
1112A ILE* 2.7 19.2 + - - -
1114A VAL* 1.3 71.3 - - + +
1116A PHE* 1.3 62.4 + - - -
1118A SER* 2.7 19.9 + - - -
1119A ILE* 3.0 28.3 + - + +
1133A LEU* 3.8 20.2 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with PHE1116 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121A ILE* 4.2 26.0 - - + -
124A GLY 5.5 0.7 - - - -
125A ILE* 3.9 31.9 - - + -
128A CYS* 4.4 9.9 - - - -
1112A ILE* 2.8 48.9 + - + +
1113A ALA* 4.0 4.7 - - - +
1115A THR* 1.3 79.2 + - - +
1117A ILE* 1.3 58.3 + - - +
1119A ILE* 3.8 4.3 - - + +
1120A LEU* 2.8 54.1 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE1117 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1012A GLN* 4.2 11.2 - - + +
1014A TYR* 3.4 41.1 - - + +
1015A ILE* 4.4 11.2 - - + -
1113A ALA 3.0 24.8 + - - +
1114A VAL* 3.5 11.9 - - - +
1116A PHE* 1.3 76.8 - - - +
1118A SER* 1.3 54.6 + - - +
1120A LEU* 4.6 5.2 - - - -
1121A THR* 2.5 58.5 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with SER1118 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109A TYR* 4.7 3.5 + - - -
1012A GLN* 3.5 31.2 + - - +
1114A VAL 2.8 18.0 + - - -
1115A THR* 2.7 25.1 + - - -
1117A ILE* 1.3 79.0 - - - +
1119A ILE* 1.3 63.6 + - - +
1121A THR* 3.6 12.8 + - - +
1123A GLY* 5.1 3.5 + - - -
1129A VAL* 5.2 17.3 - - - +
1132A ILE* 5.1 9.6 - - - -
1133A LEU* 4.2 13.0 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE1119 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105A ILE* 4.0 38.1 - - + -
109A TYR* 2.7 34.2 + - + +
117A ARG* 4.9 12.0 - - + +
120A ALA* 3.7 24.9 - - + -
121A ILE* 4.6 20.4 - - + +
124A GLY* 4.9 11.7 - - - -
1115A THR* 3.0 31.2 + - + +
1116A PHE* 3.9 3.1 - - + +
1118A SER* 1.3 86.1 + - - +
1120A LEU* 1.3 64.3 + - + +
1121A THR 3.8 0.7 - - - +
1129A VAL* 5.9 2.2 - - + -
1133A LEU* 5.5 3.4 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1120 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117A ARG* 4.7 32.8 + - + +
121A ILE* 5.4 13.5 - - + -
1116A PHE* 2.8 50.2 + - + +
1117A ILE* 4.3 3.4 - - - +
1119A ILE* 1.3 76.9 - - + +
1121A THR* 1.3 64.8 + - + +
1122A THR* 4.9 2.4 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with THR1121 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109A TYR* 4.3 4.2 + - - -
1012A GLN* 4.0 12.0 + - - -
1014A TYR* 5.5 9.9 - - + -
1117A ILE* 2.5 46.3 + - + +
1118A SER 3.6 12.6 + - - +
1119A ILE 3.5 4.4 - - - +
1120A LEU* 1.3 81.3 - - + +
1122A THR* 1.3 61.2 + - - +
1123A GLY* 2.9 10.4 + - - -
----------------------------------------------------------
Back to top of page
A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il