Contacts of the helix formed by residues 116 - 166 (chain A) in PDB entry 5UAK
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLU 116 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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108A SER* 4.9 2.0 + - - -
114A LYS* 3.8 12.8 - - - +
115A GLU* 1.3 80.9 - - - +
117A ARG* 1.3 68.9 + - + +
118A SER* 3.1 17.5 - - - +
119A ILE* 3.0 27.2 + - - +
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Residues in contact with ARG 117 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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108A SER* 5.8 0.9 - - - -
109A TYR* 5.7 3.4 - - - +
116A GLU* 1.3 76.0 - - + +
118A SER* 1.3 57.6 + - - +
120A ALA* 3.0 11.9 + - - +
121A ILE* 2.8 40.3 + - + +
1119A ILE* 4.9 14.1 - - + +
1120A LEU* 4.7 29.2 + - + +
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Residues in contact with SER 118 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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116A GLU* 4.4 14.9 - - - +
117A ARG* 1.3 82.1 - - - +
119A ILE* 1.3 56.2 + - - -
121A ILE* 3.8 10.1 - - - -
122A TYR* 2.9 59.8 + - - +
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Residues in contact with ILE 119 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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104A ARG* 5.7 1.0 - - - +
108A SER* 4.1 20.0 - - - +
115A GLU* 3.3 49.4 - - + +
116A GLU 3.0 22.6 + - - +
118A SER* 1.3 77.6 - - - +
120A ALA* 1.3 63.2 + - - +
122A TYR* 5.1 2.5 - - - -
123A LEU* 3.6 28.0 - - + +
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Residues in contact with ALA 120 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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104A ARG 6.0 0.9 - - - -
105A ILE* 3.4 30.1 - - + +
108A SER* 4.4 18.2 - - - +
109A TYR* 5.6 2.5 - - + -
117A ARG* 3.0 12.1 + - - +
119A ILE* 1.3 81.0 - - - +
121A ILE* 1.3 54.9 + - - +
123A LEU* 3.0 7.4 + - - +
124A GLY* 2.8 29.9 + - - -
1119A ILE* 3.7 20.6 - - + -
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Residues in contact with ILE 121 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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117A ARG* 2.8 28.3 + - + +
118A SER* 3.6 13.2 - - - +
120A ALA* 1.3 73.0 - - - +
122A TYR* 1.3 68.6 + - + +
124A GLY* 4.2 2.9 - - - +
125A ILE* 2.9 37.0 + - + +
1116A PHE* 4.2 42.4 - - + -
1119A ILE* 5.0 20.4 - - + -
1120A LEU* 5.4 13.5 - - + -
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Residues in contact with TYR 122 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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118A SER* 2.9 48.4 + - - +
119A ILE* 5.0 1.6 - - - +
121A ILE* 1.3 83.7 - - + +
123A LEU* 1.3 67.8 + - + +
125A ILE* 3.5 18.0 - - + +
126A GLY* 4.1 2.8 + - - -
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Residues in contact with LEU 123 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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101A LEU* 3.6 32.1 - - + +
104A ARG* 3.5 49.6 - - + +
105A ILE* 4.9 4.7 - - + -
119A ILE* 3.6 22.0 - - + +
120A ALA 3.0 8.5 + - - +
122A TYR* 1.3 84.5 - - + +
124A GLY* 1.3 52.8 + - - +
126A GLY* 2.8 23.6 + - - -
127A LEU* 2.8 16.4 + - - -
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Residues in contact with GLY 124 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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105A ILE* 4.5 11.3 - - - +
120A ALA 2.8 18.6 + - - -
121A ILE* 3.7 7.0 - - - -
123A LEU* 1.3 73.1 - - - +
125A ILE* 1.3 51.4 + - - +
127A LEU* 3.4 10.6 + - - +
128A CYS* 2.8 42.6 + - - -
1115A THR* 6.3 1.3 - - - -
1116A PHE* 5.5 0.9 - - - -
1119A ILE* 4.9 9.2 - - - -
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Residues in contact with ILE 125 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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121A ILE* 2.9 24.0 + - + +
122A TYR* 3.5 19.3 - - + +
124A GLY* 1.3 74.6 - - - +
126A GLY* 1.3 57.2 + - - +
128A CYS* 3.4 9.0 + - + +
129A LEU* 2.8 37.2 + - + +
1112A ILE* 6.3 0.2 - - + -
1116A PHE* 3.9 28.9 - - + -
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Residues in contact with GLY 126 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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101A LEU* 4.6 4.7 - - - -
122A TYR 4.1 2.4 + - - -
123A LEU 2.8 14.5 + - - -
125A ILE* 1.3 78.5 - - - +
127A LEU* 1.3 52.4 + - - -
129A LEU* 3.1 8.7 + - - +
130A LEU* 2.8 45.1 + - - +
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Residues in contact with LEU 127 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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98A GLN* 3.7 29.8 - - + +
101A LEU* 3.7 27.6 - - + +
102A LEU 4.0 5.2 - - - +
105A ILE* 6.0 2.7 - - + -
123A LEU 2.8 14.3 + - - +
124A GLY* 3.6 13.7 - - - +
126A GLY* 1.3 71.0 - - - -
128A CYS* 1.3 60.9 + - - +
130A LEU* 3.4 16.8 - - - +
131A PHE* 3.1 29.3 - - + -
1111A PHE* 3.7 29.4 - - + -
1115A THR* 5.0 3.8 - - + -
1137A MET* 3.6 28.5 - - + -
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Residues in contact with CYS 128 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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124A GLY 2.8 30.1 + - - +
125A ILE* 3.5 13.0 - - + +
126A GLY 3.3 0.2 - - - -
127A LEU* 1.3 72.5 - - - +
129A LEU* 1.3 63.6 + - - +
131A PHE* 3.5 19.7 + - - +
132A ILE* 3.6 17.1 + - + +
1108A VAL* 4.4 2.8 - - - +
1111A PHE* 4.6 8.7 - - - -
1112A ILE* 3.7 29.8 - - + -
1115A THR* 3.6 27.6 - - - -
1116A PHE* 4.4 9.6 - - - -
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Residues in contact with LEU 129 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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125A ILE* 2.8 23.0 + - + +
126A GLY* 3.4 9.4 - - - +
128A CYS* 1.3 70.4 - - - +
130A LEU* 1.3 60.9 + - + +
132A ILE* 2.9 19.7 + - + -
133A VAL* 2.8 49.9 + - + -
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Residues in contact with LEU 130 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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94A THR* 3.8 40.6 - - + +
97A VAL* 5.9 6.1 - - + -
98A GLN* 5.7 11.7 - - + +
101A LEU* 5.8 3.8 - - + -
126A GLY* 2.8 27.7 + - - +
127A LEU* 3.4 17.0 - - + +
128A CYS 3.3 0.4 - - - -
129A LEU* 1.3 76.1 - - + +
131A PHE* 1.3 57.0 + - + +
133A VAL* 3.4 15.8 - - + +
134A ARG* 3.2 35.4 + - - +
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Residues in contact with PHE 131 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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98A GLN* 3.2 42.0 - - + -
127A LEU* 3.1 33.2 - - + -
128A CYS* 3.7 12.6 - - - +
129A LEU 3.1 0.8 - - - -
130A LEU* 1.3 73.9 - - + +
132A ILE* 1.3 55.4 + - - +
134A ARG* 3.3 23.0 + - - +
135A THR* 2.6 43.7 + - - +
1104A GLU* 5.0 5.6 - - + +
1107A PHE* 6.3 0.2 - + - -
1108A VAL* 4.0 17.5 - - + -
1111A PHE* 3.3 40.4 - + - -
1140A MET* 3.4 31.0 - - + -
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Residues in contact with ILE 132 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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128A CYS 3.6 15.5 + - - +
129A LEU* 2.9 17.1 + - + +
131A PHE* 1.3 75.6 - - - +
133A VAL* 1.3 58.6 + - - +
135A THR* 3.4 7.6 + - - -
136A LEU* 3.1 43.8 + - + +
1108A VAL* 4.0 20.6 - - + -
1112A ILE* 4.4 17.7 - - + -
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Residues in contact with VAL 133 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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94A THR* 6.1 1.8 - - + +
129A LEU* 2.8 33.0 + - + +
130A LEU* 3.4 28.9 - - + +
132A ILE* 1.3 74.9 - - - +
134A ARG* 1.3 60.8 + - + +
136A LEU* 3.4 9.7 + - + +
137A LEU* 2.8 48.2 + - + +
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Residues in contact with ARG 134 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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91A GLY* 3.3 33.7 - - - -
94A THR* 3.4 13.6 + - - +
95A LYS* 3.5 36.0 - - - +
98A GLN* 3.8 15.0 + - - +
130A LEU* 3.2 30.0 + - - +
131A PHE* 3.3 31.8 + - - +
133A VAL* 1.3 79.0 - - + +
135A THR* 1.3 60.6 + - - +
137A LEU* 4.1 7.2 - - - -
138A LEU* 2.9 48.3 + - + +
1104A GLU* 4.5 8.2 + - - -
1140A MET* 3.9 17.8 - - - -
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Residues in contact with THR 135 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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131A PHE* 2.6 31.3 + - - +
132A ILE* 3.5 8.5 - - - -
134A ARG* 1.3 74.9 - - - +
136A LEU* 1.3 62.4 - - + +
137A LEU 3.6 0.2 + - - -
138A LEU* 5.3 1.1 - - - -
139A HIS* 3.2 42.9 + - + +
1101A MET* 4.3 15.6 - - + +
1104A GLU* 3.2 46.8 + - + +
1105A MET* 4.8 11.2 - - + +
1108A VAL* 5.8 2.6 - - - +
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Residues in contact with LEU 136 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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15A LEU* 4.0 36.2 - - + +
16A PHE* 4.2 25.1 - - + -
132A ILE* 3.1 36.2 + - + +
133A VAL* 3.7 9.2 - - + +
135A THR* 1.3 75.0 - - + +
137A LEU* 1.3 63.4 + - + +
140A PRO* 3.2 25.4 - - - +
1101A MET* 4.5 10.3 - - + -
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Residues in contact with LEU 137 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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87A PHE* 4.0 31.4 - - + +
90A LEU* 3.5 55.6 - - + +
91A GLY* 4.0 4.7 - - - +
94A THR* 5.5 2.7 - - + +
133A VAL* 2.8 45.3 + - + +
134A ARG* 3.2 9.4 + - + +
136A LEU* 1.3 79.3 - - + +
138A LEU* 1.3 66.6 + - + +
140A PRO* 3.7 5.0 - - - +
141A ALA* 3.6 14.7 + - - +
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Residues in contact with LEU 138 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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87A PHE 4.4 0.7 - - - +
88A LEU* 3.9 40.8 - - + +
91A GLY* 4.3 10.8 - - - -
92A GLU* 4.7 4.0 - - + +
95A LYS* 3.7 21.5 - - - +
134A ARG* 2.9 44.2 + - + +
135A THR* 4.7 2.5 - - - +
137A LEU* 1.3 73.1 - - - +
139A HIS* 1.3 66.6 + - + +
141A ALA* 2.8 26.1 + - - +
142A ILE* 2.9 17.3 + - + +
1104A GLU* 5.7 4.7 - - - +
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Residues in contact with HIS 139 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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17A PHE* 4.8 3.8 - - + -
135A THR* 3.2 28.3 + - + +
138A LEU* 1.3 81.7 - - + +
140A PRO* 1.3 68.5 - - + +
142A ILE* 3.5 9.5 - - - +
143A PHE* 3.5 4.2 + - - +
1097A ARG* 3.0 47.7 + - - +
1100A GLN* 3.3 29.0 + - + -
1101A MET* 3.5 34.8 - - + -
1104A GLU* 3.1 22.4 + - - -
1144A GLN* 4.9 9.2 - - - -
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Residues in contact with PRO 140 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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15A LEU* 3.7 28.9 - - + +
17A PHE* 5.3 6.5 - - + -
84A TYR* 4.4 8.0 - - + -
135A THR 4.3 0.4 - - - +
136A LEU* 3.2 28.7 - - - +
137A LEU 3.7 2.9 - - - +
138A LEU 3.5 2.2 - - - -
139A HIS* 1.3 94.1 - - + +
141A ALA* 1.3 57.9 + - - +
143A PHE* 3.1 9.6 + - + +
144A GLY* 3.0 26.9 + - - -
1101A MET* 5.2 1.8 - - - -
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Residues in contact with ALA 141 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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84A TYR* 3.6 23.4 - - - +
87A PHE* 3.6 24.7 - - + -
88A LEU* 4.0 16.2 - - + +
137A LEU 3.6 12.9 + - - +
138A LEU 2.8 14.8 + - - +
140A PRO* 1.3 75.4 - - - +
142A ILE* 1.3 58.3 + - - +
144A GLY 3.8 0.7 + - - -
145A LEU* 3.4 28.1 + - - +
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Residues in contact with ILE 142 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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88A LEU* 4.5 17.4 - - + +
138A LEU 2.9 13.4 + - - +
139A HIS* 3.5 9.6 - - - +
141A ALA* 1.3 74.3 - - - +
143A PHE* 1.3 67.6 + - - +
145A LEU* 3.3 8.2 + - + +
146A HIS* 2.9 44.1 + - + +
196A ALA* 3.7 24.5 - - + +
197A LEU* 6.2 1.3 - - + -
200A PHE* 5.1 9.2 - - + -
1097A ARG* 3.2 40.2 - - - +
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Residues in contact with PHE 143 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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17A PHE* 4.1 26.2 - + + -
19A TRP* 5.8 2.9 - + - -
139A HIS 3.6 11.2 - - - +
140A PRO* 3.1 11.3 + - + +
142A ILE* 1.3 80.0 - - - +
144A GLY* 1.3 57.6 + - - +
146A HIS* 3.3 9.6 + + + +
147A HIS* 2.8 42.1 + + + +
1090A PHE* 3.8 32.5 - + - -
1093A LEU* 3.8 35.4 - - + -
1094A SER* 4.2 6.1 - - - -
1097A ARG* 3.6 24.5 - - + +
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Residues in contact with GLY 144 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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84A TYR* 3.6 40.5 - - - -
140A PRO 3.0 10.9 + - - -
141A ALA 3.8 0.2 + - - -
142A ILE 3.4 0.2 - - - -
143A PHE* 1.3 81.1 - - - +
145A LEU* 1.3 55.2 + - - +
147A HIS* 3.2 7.4 + - - +
148A ILE* 2.8 33.4 + - - +
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Residues in contact with LEU 145 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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81A PHE* 3.4 49.4 - - + +
84A TYR* 4.5 9.4 - - + -
85A GLY* 5.0 2.9 - - - +
88A LEU* 3.5 29.6 - - + -
141A ALA 3.4 18.3 + - - +
142A ILE* 3.3 8.9 + - + +
143A PHE 3.3 0.6 - - - -
144A GLY* 1.3 71.9 - - - +
146A HIS* 1.3 61.7 + - - +
148A ILE* 3.4 4.4 + - + -
149A GLY* 3.0 22.3 + - - -
195A LEU* 3.5 17.9 - - - +
196A ALA* 3.8 33.4 - - + +
199A HIS* 4.8 6.1 - - + -
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Residues in contact with HIS 146 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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142A ILE* 2.9 41.7 + - + +
143A PHE* 3.5 10.8 - + + +
145A LEU* 1.3 77.9 - - - +
147A HIS* 1.3 58.5 + - - +
149A GLY* 3.1 14.4 + - - -
150A MET* 3.2 14.6 + - - +
192A ASP* 3.4 13.4 - - - +
193A GLU* 3.7 40.4 + - + +
196A ALA* 4.2 10.3 - - + -
1093A LEU* 3.7 39.7 - - + +
1097A ARG* 5.4 8.4 + - - -
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Residues in contact with HIS 147 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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41A PRO* 6.2 2.2 - - - +
43A VAL* 5.4 6.1 - - + -
44A ASP* 3.6 30.3 + - - -
84A TYR* 4.9 11.1 + - - +
143A PHE* 2.8 31.8 + + + +
144A GLY* 3.4 10.3 + - - +
146A HIS* 1.3 73.8 - - - +
148A ILE* 1.3 62.3 + - - +
150A MET* 3.5 20.6 + - + +
151A GLN* 3.6 16.6 + - + +
1090A PHE* 3.8 31.2 - + + -
1093A LEU* 5.0 2.6 - - - +
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Residues in contact with ILE 148 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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77A PHE* 4.5 26.0 - - + +
80A ARG* 4.2 4.5 - - + +
81A PHE* 3.7 37.0 - - + +
84A TYR* 3.6 27.1 - - + -
144A GLY 2.8 26.3 + - - +
145A LEU* 3.8 6.7 - - + +
147A HIS* 1.3 72.3 - - + +
149A GLY* 1.3 54.0 + - - +
150A MET 3.2 0.2 - - - -
151A GLN* 2.9 12.7 + - + +
152A MET* 2.8 41.6 + - + +
195A LEU* 3.7 15.9 - - + -
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Residues in contact with GLY 149 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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145A LEU 3.0 11.8 + - - -
146A HIS 3.1 7.1 + - - -
148A ILE* 1.3 76.0 - - - +
150A MET* 1.3 51.3 + - - +
152A MET* 3.4 6.3 + - - +
153A ARG* 2.8 36.6 + - - +
191A PHE 5.0 0.9 - - - -
192A ASP* 3.2 30.5 - - - +
195A LEU* 3.7 10.4 - - - +
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Residues in contact with MET 150 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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44A ASP* 4.3 13.0 - - - +
49A LEU* 4.7 0.2 - - - -
146A HIS* 3.2 9.3 + - + +
147A HIS* 3.6 13.5 - - + +
148A ILE 3.2 0.4 - - - -
149A GLY* 1.3 72.8 - - - +
151A GLN* 1.3 59.0 + - - +
153A ARG* 4.0 14.8 - - - -
154A ILE* 2.8 57.0 + - + +
192A ASP* 3.3 34.8 - - - +
1086A THR* 5.2 6.7 - - + -
1089A TRP* 3.3 34.3 - - + +
1090A PHE* 5.2 13.7 - - + -
1093A LEU* 3.5 25.6 - - + -
----------------------------------------------------------
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Residues in contact with GLN 151 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
43A VAL* 4.2 12.5 - - - +
44A ASP* 2.8 44.3 + - - +
49A LEU* 3.2 31.1 - - - +
52A LYS* 6.2 0.3 - - - +
53A LEU* 5.3 0.3 - - - +
73A LEU* 5.9 0.2 - - - +
77A PHE* 3.6 41.3 - - + -
147A HIS* 3.6 20.4 + - + +
148A ILE* 2.9 13.3 + - + +
150A MET* 1.3 77.4 - - - +
152A MET* 1.3 60.5 + - - +
155A ALA* 3.5 22.9 + - - +
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Residues in contact with MET 152 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73A LEU* 3.4 46.0 - - + +
74A ARG* 5.8 4.3 - - - -
77A PHE* 3.3 41.5 - - + -
148A ILE* 2.8 28.6 + - + +
149A GLY* 3.5 7.6 - - - +
151A GLN* 1.3 80.1 - - - +
153A ARG* 1.3 61.0 + - - +
155A ALA* 4.5 1.0 - - - +
156A MET* 3.3 28.6 + - - +
191A PHE* 3.5 24.2 - - + +
195A LEU* 4.2 17.7 - - + -
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Residues in contact with ARG 153 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149A GLY 2.8 21.8 + - - +
150A MET* 4.0 16.1 - - - +
152A MET* 1.3 73.8 - - - +
154A ILE* 1.3 77.2 + - - +
156A MET* 3.3 13.2 + - - +
157A PHE* 3.4 35.3 + - + -
187A ASN* 4.8 1.5 + - - +
188A LEU* 3.7 51.0 + - - +
191A PHE* 4.3 17.3 - - + -
192A ASP* 3.2 21.7 + - - +
1085A HIS* 4.0 27.8 + - - -
1086A THR* 5.2 4.0 + - - +
1089A TRP* 4.3 24.9 - - - +
----------------------------------------------------------
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Residues in contact with ILE 154 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44A ASP* 4.8 7.0 - - + +
45A SER* 5.4 0.7 - - - +
46A ALA* 4.7 14.6 - - + +
49A LEU* 3.7 18.2 - - + -
150A MET* 2.8 43.2 + - + +
153A ARG* 1.3 86.1 - - - +
155A ALA* 1.3 61.8 + - - +
157A PHE* 3.7 7.7 + - - +
158A SER* 3.3 20.8 + - - -
1082A LEU* 4.6 23.9 - - + +
1086A THR* 3.6 41.5 - - + +
----------------------------------------------------------
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Residues in contact with ALA 155 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
49A LEU* 3.4 32.5 - - + +
50A SER* 4.8 1.9 + - - -
53A LEU* 3.3 28.2 - - + +
77A PHE* 5.9 1.1 - - + -
151A GLN 3.5 20.1 + - - +
152A MET 4.5 0.9 - - - +
153A ARG 3.3 0.6 - - - -
154A ILE* 1.3 79.5 - - - +
156A MET* 1.3 50.9 + - - +
158A SER* 3.4 5.2 + - - -
159A LEU* 2.8 36.2 + - - +
----------------------------------------------------------
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Residues in contact with MET 156 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
53A LEU* 5.1 5.2 - - + -
69A LEU* 5.8 2.7 - - + -
73A LEU* 4.7 19.1 - - + -
152A MET 3.3 18.8 + - - +
153A ARG 3.3 8.1 + - - +
155A ALA* 1.3 74.9 - - - +
157A PHE* 1.3 62.3 + - + +
159A LEU* 3.7 5.9 - - + +
160A ILE* 2.9 38.7 + - + +
187A ASN* 4.0 24.5 - - - +
191A PHE* 3.5 26.2 - - + -
367A ALA 5.1 0.7 - - - +
368A ILE* 5.1 9.6 - - + -
371A ILE* 3.7 41.3 - - + -
----------------------------------------------------------
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Residues in contact with PHE 157 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
153A ARG* 3.4 46.3 + - + -
154A ILE* 4.2 7.0 - - - +
156A MET* 1.3 77.4 - - + +
158A SER* 1.3 60.5 + - - +
160A ILE* 3.5 13.5 - - + +
161A TYR* 3.4 21.8 + - - +
183A LEU* 6.2 1.3 - - + -
184A LEU* 3.5 61.2 - - + -
187A ASN* 3.7 26.5 - - + -
188A LEU* 4.1 16.4 - - + -
1051A ILE* 6.4 0.9 - - + -
1078A PHE* 4.0 11.2 - - + -
1082A LEU* 4.7 16.6 - - + -
----------------------------------------------------------
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Residues in contact with SER 158 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46A ALA* 3.9 5.1 - - - +
50A SER* 2.6 29.5 + - - -
154A ILE 3.3 16.7 + - - -
155A ALA* 3.6 4.5 - - - -
156A MET 3.2 0.4 - - - -
157A PHE* 1.3 77.7 - - - +
159A LEU* 1.3 62.4 + - - +
161A TYR* 3.5 12.8 - - - +
162A LYS* 3.7 12.6 + - - +
1078A PHE* 4.2 9.9 - - - -
1079A HIS* 3.3 24.1 + - - -
1082A LEU* 4.1 11.1 - - - +
----------------------------------------------------------
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Residues in contact with LEU 159 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
50A SER* 4.7 8.3 + - - +
53A LEU* 3.8 42.2 - - + +
54A GLU* 4.6 5.6 - - + +
57A TRP* 5.3 13.2 - - + -
155A ALA 2.8 18.9 + - - +
156A MET* 3.3 7.6 + - + +
158A SER* 1.3 70.6 - - - +
160A ILE* 1.3 63.5 + - + +
161A TYR 3.2 0.2 - - - -
162A LYS* 3.0 33.1 + - + +
163A LYS* 3.6 4.4 + - + +
375A LEU* 3.6 33.2 - - + -
----------------------------------------------------------
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Residues in contact with ILE 160 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
156A MET* 2.9 24.8 + - + +
157A PHE* 3.5 18.8 - - + +
159A LEU* 1.3 77.8 - - + +
161A TYR* 1.3 58.3 + - + +
163A LYS* 3.0 11.6 + - + +
164A THR* 2.8 39.4 + - + -
180A LEU* 4.9 14.8 - - + -
183A LEU* 5.5 9.9 - - + -
184A LEU* 4.8 19.1 - - + -
371A ILE* 4.9 28.0 - - + +
374A PHE* 5.3 16.6 - - + -
375A LEU* 5.1 13.2 - - + -
1055A LEU* 5.2 6.1 - - + -
----------------------------------------------------------
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Residues in contact with TYR 161 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
157A PHE 3.4 15.2 + - - +
158A SER 3.5 9.6 - - - +
159A LEU 3.2 0.4 - - - -
160A ILE* 1.3 81.6 - - + +
162A LYS* 1.3 62.7 + - + +
164A THR* 3.3 23.0 - - + +
165A LEU* 3.4 33.0 - - + +
1054A HIS* 3.2 23.9 - - - -
1055A LEU* 4.2 19.1 - - + -
1058A SER* 3.9 24.0 - - - -
1074A PHE* 3.8 8.9 + - - +
1075A GLU* 4.1 20.4 - - + -
1078A PHE* 3.4 55.6 - + + -
1079A HIS* 6.2 1.1 - + - -
----------------------------------------------------------
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Residues in contact with LYS 162 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
50A SER* 5.2 14.5 - - - -
54A GLU* 4.0 25.9 + - - +
158A SER 3.9 11.9 - - - +
159A LEU* 3.0 19.4 + - + +
161A TYR* 1.3 76.4 - - + +
163A LYS* 1.3 64.0 + - - +
165A LEU* 3.5 5.1 + - - +
166A LYS* 3.3 32.5 + - + +
1075A GLU* 3.2 45.4 + - + +
1079A HIS* 5.6 7.9 - - - -
----------------------------------------------------------
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Residues in contact with LYS 163 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
159A LEU* 3.6 4.3 + - + +
160A ILE* 3.0 16.4 + - + +
162A LYS* 1.3 79.8 - - - +
164A THR* 1.3 54.2 + - - +
166A LYS* 2.8 42.7 + - + +
167A LEU* 2.9 22.5 - - + +
374A PHE* 4.5 11.4 - - + +
375A LEU* 3.1 48.1 + - + +
376A GLN* 4.9 0.8 - - - +
377A LYS* 3.3 30.5 + - - +
378A GLN 5.4 0.4 - - - -
379A GLU* 3.8 16.9 + - - +
----------------------------------------------------------
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Residues in contact with THR 164 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
160A ILE* 2.8 19.3 + - + +
161A TYR* 3.3 38.4 - - + +
163A LYS* 1.3 70.9 - - - +
165A LEU* 1.3 67.6 + - + +
167A LEU* 3.5 24.9 + - - +
180A LEU* 3.9 24.5 - - - +
374A PHE* 5.3 5.5 - - - -
1055A LEU* 5.4 8.7 - - + +
1059A LEU* 4.9 14.2 - - - +
1062A LEU* 4.5 9.5 - - - +
----------------------------------------------------------
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Residues in contact with LEU 165 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
161A TYR* 3.4 46.9 - - + +
162A LYS 3.5 7.1 + - - +
163A LYS 3.1 0.6 - - - -
164A THR* 1.3 82.0 - - + +
166A LYS* 1.3 62.3 + - + +
167A LEU 3.4 4.4 + - - -
380A TYR* 5.7 0.3 - - - -
1058A SER* 5.0 10.1 - - - +
1062A LEU* 3.9 13.3 - - + +
1065A LEU* 3.6 29.8 - - + -
1066A ARG* 3.6 25.5 + - - +
1071A GLN* 4.6 18.2 - - + +
1074A PHE* 5.2 1.8 - - + -
1075A GLU* 3.9 23.3 - - + +
----------------------------------------------------------
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Residues in contact with LYS 166 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
162A LYS* 3.3 20.8 + - + +
163A LYS* 2.8 24.0 + - + +
165A LEU* 1.3 73.3 - - + +
167A LEU* 1.3 59.7 + - - +
379A GLU* 3.2 29.6 - - + +
380A TYR* 4.1 16.6 - - + +
1066A ARG* 4.9 0.2 - - - +
1071A GLN* 3.4 38.6 - - - +
1075A GLU* 5.4 3.4 - - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il