Contacts of the helix formed by residues 132 - 160 (chain H) in PDB entry 5VOT
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with HIS 132 (chain H).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
130H THR 2.8 5.9 + - - -
131H ARG* 1.3 80.5 - - + +
133H ASN* 1.3 71.5 + - - +
134H ILE 3.5 1.5 + - - -
135H ILE* 4.3 1.6 + - - +
136H LEU* 3.3 29.5 + - + +
205H HIS* 4.2 23.8 - - + -
208H LEU* 5.4 6.3 - - + -
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Residues in contact with ASN 133 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
130H THR* 3.6 9.4 + - - +
132H HIS* 1.3 86.7 - - - +
134H ILE* 1.3 68.6 + - + +
136H LEU* 3.6 4.2 + - - +
137H SER* 2.9 30.2 + - - -
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Residues in contact with ILE 134 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121H CYS* 3.7 28.0 - - + +
124H ALA* 5.0 3.6 - - + -
125H SER* 3.8 20.4 - - - +
128H TYR* 5.3 8.3 - - + +
129H LYS 5.3 0.7 - - - +
130H THR* 3.2 34.4 + - + +
132H HIS 3.5 0.6 - - - -
133H ASN* 1.3 81.0 - - + +
135H ILE* 1.3 69.1 + - - +
137H SER* 2.4 29.0 + - - +
138H ALA* 2.9 9.0 + - + +
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Residues in contact with ILE 135 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122H ILE* 6.5 0.2 - - - -
125H SER* 4.9 11.2 - - - +
130H THR 5.4 0.6 + - - -
131H ARG 5.3 6.7 + - - +
132H HIS 4.3 3.4 + - - +
133H ASN 3.6 0.2 - - - -
134H ILE* 1.3 78.9 - - - +
136H LEU* 1.3 62.2 + - - +
138H ALA* 3.9 3.8 - - - +
139H GLY* 2.9 22.3 + - - -
197H ALA* 5.2 8.6 - - + +
198H VAL* 5.9 0.3 - - - +
200H MET* 6.5 0.2 - - + -
201H PHE* 4.6 18.8 - - + +
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Residues in contact with LEU 136 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
542C LEU* 5.5 3.6 - - + -
546C PHE* 3.5 41.7 - - + -
132H HIS* 3.3 23.0 + - + +
133H ASN* 3.6 4.2 + - - +
134H ILE 3.2 0.4 - - - -
135H ILE* 1.3 78.3 - - - +
137H SER* 1.3 62.5 + - - +
139H GLY* 3.3 1.5 + - - -
140H ILE* 2.9 34.7 + - + +
198H VAL* 5.2 14.4 - - + +
201H PHE* 3.4 26.0 - - + -
202H ILE* 5.3 4.5 - - + +
205H HIS* 3.3 28.5 - - + +
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Residues in contact with SER 137 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121H CYS* 5.6 2.3 - - - +
133H ASN 2.9 14.2 + - - -
134H ILE* 2.4 37.8 + - - +
136H LEU* 1.3 75.7 - - - +
138H ALA* 1.3 64.9 + - - +
140H ILE* 2.9 22.0 + - - +
141H PHE* 3.0 32.0 + - - -
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Residues in contact with ALA 138 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117H MET 4.8 1.8 - - - +
118H GLY* 4.5 5.5 - - - +
121H CYS* 3.7 33.7 - - + +
122H ILE* 4.2 22.2 - - + -
125H SER* 6.4 0.2 - - - -
134H ILE* 2.9 12.5 + - + +
135H ILE* 4.2 2.9 - - - +
137H SER* 1.3 78.7 + - - +
139H GLY* 1.3 58.3 + - - +
141H PHE* 3.8 6.8 - - - +
142H PHE* 2.8 33.2 + - - +
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Residues in contact with GLY 139 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122H ILE* 6.5 0.2 - - - -
135H ILE 2.9 19.5 + - - -
136H LEU 3.6 1.6 - - - -
138H ALA* 1.3 76.3 - - - +
140H ILE* 1.3 61.9 + - - +
142H PHE* 3.2 5.8 + - - +
143H VAL* 2.9 33.3 + - - +
197H ALA* 4.4 19.7 - - - +
198H VAL* 4.7 11.0 - - - -
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Residues in contact with ILE 140 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
542C LEU* 4.1 27.6 - - + -
546C PHE* 5.6 8.7 - - + -
808D LEU* 5.5 4.9 - - + -
811D LEU* 3.7 39.7 - - + -
136H LEU* 2.9 29.7 + - + +
137H SER* 2.9 9.6 + - - +
139H GLY* 1.3 75.7 - - - +
141H PHE* 1.3 80.0 + - + +
142H PHE 3.0 0.5 + - - -
143H VAL* 3.2 2.4 + - - +
144H SER* 2.9 30.0 + - - +
198H VAL* 5.2 1.3 - - + +
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Residues in contact with PHE 141 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
808D LEU* 5.1 13.7 - - + -
114H LEU* 4.1 24.3 - - + +
117H MET* 5.6 15.0 - - + -
118H GLY* 6.3 1.1 - - - +
121H CYS* 6.3 3.1 - - - -
137H SER* 3.0 30.4 + - - +
138H ALA* 4.3 5.4 - - - +
140H ILE* 1.3 92.3 - - + +
142H PHE* 1.3 56.6 + - - +
144H SER* 3.1 9.5 + - - -
145H ALA* 2.9 26.9 + - - +
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Residues in contact with PHE 142 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16H GLY 5.2 8.7 - - - -
17H ALA* 5.6 6.3 - - - -
20H ALA* 5.7 0.7 - - + -
114H LEU 5.3 2.5 - - - -
115H LEU* 3.6 30.9 - - + +
118H GLY* 4.6 18.8 - - - -
122H ILE* 5.5 11.2 - - + -
138H ALA 2.8 22.2 + - - +
139H GLY* 3.4 4.7 - - - +
140H ILE 3.0 0.2 - - - -
141H PHE* 1.3 76.2 - - - +
143H VAL* 1.3 65.5 + - + +
145H ALA* 3.0 7.1 - - - +
146H GLY* 3.0 17.2 + - - -
190H ALA* 2.9 43.9 - - + +
193H VAL* 3.5 15.7 - - + -
194H GLY* 3.2 27.8 - - - -
197H ALA* 5.4 2.2 - - + -
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Residues in contact with VAL 143 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
538C VAL* 3.9 22.7 - - + -
539C VAL* 4.4 18.8 - - + -
542C LEU* 5.9 8.3 - - + -
139H GLY 2.9 21.3 + - - +
140H ILE* 4.0 3.1 - - - +
142H PHE* 1.3 72.4 - - + +
144H SER* 1.3 59.8 + - - +
146H GLY* 2.7 23.1 + - - +
147H LEU* 2.9 12.1 + - + +
190H ALA 6.2 0.2 - - - -
191H GLU* 3.5 25.8 - - - +
194H GLY* 3.8 31.4 - - - +
198H VAL* 5.3 4.9 - - + -
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Residues in contact with SER 144 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
804D GLY* 6.4 0.7 - - - -
114H LEU* 4.6 6.2 - - - +
140H ILE* 2.9 24.5 + - - -
141H PHE* 3.1 17.5 + - - -
143H VAL* 1.3 77.6 - - - +
145H ALA* 1.3 58.2 + - - +
147H LEU* 3.0 21.9 + - - +
148H SER* 2.9 26.0 + - - -
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Residues in contact with ALA 145 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111H SER* 4.1 3.4 - - - +
114H LEU* 3.4 31.6 - - + -
115H LEU* 4.3 14.4 - - + +
141H PHE 2.9 20.8 + - - +
142H PHE* 3.0 17.0 - - - +
144H SER* 1.3 75.7 + - - +
146H GLY* 1.3 60.3 + - - +
148H SER* 2.2 30.1 + - - +
149H ASN* 2.9 7.3 + - - +
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Residues in contact with GLY 146 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115H LEU* 5.6 2.1 - - - +
142H PHE 3.0 8.6 + - - -
143H VAL 2.7 9.9 + - - -
145H ALA* 1.3 71.8 - - - +
147H LEU* 1.3 60.7 + - - -
149H ASN* 2.9 19.7 + - - +
150H ILE* 3.0 17.7 + - - +
187H PHE* 4.7 7.1 - - - +
190H ALA* 5.2 6.7 - - - -
191H GLU* 3.0 25.4 - - - -
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Residues in contact with LEU 147 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
535C GLY* 4.5 22.2 - - - -
539C VAL* 4.0 24.9 - - + -
800D VAL* 5.7 10.5 - - + +
803D LEU* 5.8 6.1 - - + -
804D GLY* 4.4 24.2 - - - +
143H VAL* 2.9 14.4 + - + +
144H SER* 3.2 22.7 - - - +
146H GLY* 1.3 75.5 - - - +
148H SER* 1.3 62.9 + - - +
150H ILE* 3.3 10.5 + - + +
151H ILE* 2.9 39.8 + - + +
191H GLU* 3.8 4.7 + - - +
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Residues in contact with SER 148 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107H PHE* 4.1 15.5 - - - +
110H LEU* 4.6 7.2 - - - -
111H SER* 3.4 22.9 - - - -
114H LEU* 3.8 13.3 - - - +
144H SER 2.9 11.1 + - - -
145H ALA* 2.2 30.9 + - - -
147H LEU* 1.3 75.1 - - - +
149H ASN* 1.3 56.7 + - - +
151H ILE* 3.9 9.0 - - - +
152H GLY* 2.9 26.2 + - - -
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Residues in contact with ASN 149 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107H PHE 5.4 0.2 - - - -
108H PRO* 5.4 3.5 - - - +
111H SER* 4.0 19.1 - - - +
115H LEU* 6.5 0.7 - - + -
145H ALA 2.9 10.6 + - - +
146H GLY* 2.9 11.9 + - - +
148H SER* 1.3 76.7 + - - +
150H ILE* 1.3 64.4 + - - +
152H GLY* 3.1 3.3 + - - -
153H ILE* 2.9 28.7 + - + +
183H GLY 5.7 1.1 - - - +
187H PHE* 4.0 20.6 - - + -
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Residues in contact with ILE 150 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
528C CYS* 5.4 0.9 - - - +
531C PHE* 3.6 61.0 - - + +
532C ALA* 4.8 4.3 - - + +
534C ILE* 4.2 13.2 - - + -
535C GLY* 5.3 1.1 - - - -
146H GLY 3.0 18.9 + - - +
147H LEU* 4.0 12.3 - - + +
149H ASN* 1.3 73.1 - - - +
151H ILE* 1.3 66.1 + - + +
153H ILE* 3.0 13.4 + - + +
154H ILE* 2.9 38.8 + - + +
187H PHE* 4.2 16.8 - - + -
188H ILE* 6.3 0.9 - - + -
191H GLU* 4.7 9.2 - - + +
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Residues in contact with ILE 151 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
797D TYR* 4.7 20.0 - - + +
800D VAL* 4.3 20.2 - - + +
801D GLY* 4.3 24.7 - - - +
107H PHE* 3.6 28.9 - - + -
147H LEU* 2.9 33.9 + - + +
148H SER* 3.9 6.7 - - - +
150H ILE* 1.3 76.7 - - + +
152H GLY* 1.3 62.3 + - - +
154H ILE* 3.1 15.2 + - + +
155H VAL* 2.9 19.2 + - - +
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Residues in contact with GLY 152 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107H PHE* 3.6 27.8 - - - +
108H PRO* 4.4 12.9 - - - +
148H SER 2.9 12.8 + - - -
149H ASN 3.5 3.6 - - - -
151H ILE* 1.3 77.1 - - - +
153H ILE* 1.3 62.2 + - - +
155H VAL* 2.9 15.1 + - - +
156H TYR* 2.9 13.6 + - - +
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Residues in contact with ILE 153 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
528C CYS* 5.3 1.8 - - - -
531C PHE* 4.7 16.8 - - + -
149H ASN* 2.9 18.4 + - + +
150H ILE* 3.3 17.5 - - + +
152H GLY* 1.3 74.1 - - - +
154H ILE* 1.3 63.2 + - + +
156H TYR* 3.1 7.2 + - - +
157H ILE* 2.9 35.6 + - + +
180H PHE* 3.6 32.8 - - + -
183H GLY 4.7 4.3 - - - +
184H ALA* 4.1 33.0 - - + +
187H PHE* 5.1 2.7 - - + -
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Residues in contact with ILE 154 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
528C CYS* 4.7 17.7 - - + +
531C PHE* 6.1 0.2 - - + -
532C ALA* 6.4 1.6 - - + -
793D ALA* 4.5 14.8 - - + +
796D PHE* 3.9 48.9 - - + -
797D TYR* 4.5 11.7 - - + +
800D VAL* 5.1 7.6 - - + -
150H ILE* 2.9 33.8 + - + +
151H ILE* 3.1 23.5 + - + +
153H ILE* 1.3 76.8 - - + +
155H VAL* 1.3 63.6 + - - +
157H ILE* 4.1 3.7 - - - +
158H SER* 2.9 26.8 + - - -
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Residues in contact with VAL 155 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
797D TYR* 5.7 7.2 - - + +
98H LEU* 6.2 3.8 - - + -
101H VAL* 5.8 3.4 - - + -
102H ARG* 4.5 17.3 - - + +
107H PHE* 4.5 13.9 - - + -
108H PRO* 6.4 0.4 - - + -
151H ILE 2.9 10.3 + - - +
152H GLY* 2.9 14.4 + - - +
154H ILE* 1.3 76.9 - - - +
156H TYR* 1.3 61.9 + - - +
158H SER* 2.2 26.4 + - - -
159H ALA* 2.9 12.9 + - - +
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Residues in contact with TYR 156 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32H TYR* 3.8 24.2 + - + +
33H TRP* 3.1 29.1 - - + +
35H TYR* 5.6 0.2 + - - -
61H SER* 4.8 1.4 + - - -
63H LEU* 3.6 49.1 + - + -
102H ARG* 5.5 3.8 - - + -
152H GLY 2.9 11.4 + - - +
153H ILE* 3.1 9.8 + - - +
155H VAL* 1.3 79.5 - - - +
157H ILE* 1.3 68.6 + - + +
158H SER 3.1 1.0 + - - -
159H ALA* 3.2 3.7 + - + +
160H ASN* 2.6 66.2 + - - -
176H TYR* 4.9 11.2 - + - -
180H PHE* 4.8 12.8 - + - -
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Residues in contact with ILE 157 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
524C GLU* 4.5 18.4 - - + -
527C MET* 6.4 0.2 - - + -
528C CYS* 4.2 21.3 - - - -
531C PHE* 6.0 0.7 - - + -
790D SER* 5.2 5.8 - - - -
153H ILE* 2.9 41.4 + - + +
154H ILE* 4.3 2.9 - - - +
156H TYR* 1.3 78.2 - - + +
158H SER* 1.3 64.5 + - - +
160H ASN* 3.6 17.0 + - - +
161H ALA* 4.4 3.1 + - - +
174H TYR* 5.3 2.2 - - - +
176H TYR* 3.5 34.3 - - + +
180H PHE* 3.9 13.9 - - + -
----------------------------------------------------------
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Residues in contact with SER 158 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
790D SER* 4.7 14.2 + - - -
793D ALA* 4.4 19.7 - - - -
797D TYR* 5.8 6.1 - - - -
98H LEU* 4.9 15.7 - - - +
154H ILE* 2.9 16.6 + - - -
155H VAL* 2.2 33.6 + - - -
157H ILE* 1.3 80.1 - - - +
159H ALA* 1.3 64.9 + - - +
160H ASN 3.0 1.7 + - - -
161H ALA* 3.2 15.6 + - - +
----------------------------------------------------------
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Residues in contact with ALA 159 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98H LEU* 5.4 15.3 - - + +
99H ARG* 5.5 3.8 - - - -
102H ARG* 3.5 32.5 - - + -
155H VAL 2.9 8.3 + - - +
156H TYR* 3.2 3.5 + - + +
158H SER* 1.3 80.7 + - - +
160H ASN* 1.3 57.6 + - - +
161H ALA 2.9 13.1 + - - -
----------------------------------------------------------
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Residues in contact with ASN 160 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63H LEU* 5.3 0.9 - - - +
156H TYR* 2.6 70.6 + - - +
157H ILE* 3.6 10.8 - - - +
158H SER 3.0 1.4 + - - -
159H ALA* 1.3 77.3 - - - +
161H ALA* 1.3 57.1 + - - +
174H TYR* 5.5 10.2 + - + +
176H TYR* 5.7 2.2 - - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il