Contacts of the helix formed by residues 177 - 212 (chain E) in PDB entry 5VOT


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with GLY 177 (chain E).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     31E  ASP      3.2     7.9    -      -       -      -
     32E  TYR      3.1    22.5    +      -       -      -
     33E  TRP*     3.3    18.6    -      -       -      +
     34E  LEU*     4.5     6.1    -      -       -      -
    176E  TYR*     1.3    78.2    -      -       -      +
    178E  TRP*     1.3    65.5    +      -       -      +
    180E  PHE*     3.1    19.6    -      -       -      +
    181E  TYR*     3.9     5.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with TRP 178 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     31E  ASP*     2.7    19.3    +      -       +      +
     34E  LEU*     6.2     3.6    -      -       +      +
    176E  TYR      5.4     4.2    +      -       -      -
    177E  GLY*     1.3    72.3    -      -       -      -
    179E  SER*     1.3    55.7    +      -       -      +
    180E  PHE      3.0     5.2    +      -       -      -
    181E  TYR*     3.3    24.4    +      +       +      +
    182E  PHE*     2.9    24.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with SER 179 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     26E  ILE      4.1     1.8    -      -       -      -
     27E  ALA*     3.6    29.7    -      -       -      +
     30E  THR      3.1    27.1    -      -       -      -
     31E  ASP*     2.5    19.2    +      -       -      +
     32E  TYR*     3.5     7.6    -      -       -      -
    178E  TRP*     1.3    70.1    -      -       -      +
    180E  PHE*     1.3    57.9    +      -       -      -
    182E  PHE*     3.4    11.5    -      -       -      +
    183E  GLY*     2.9    21.8    +      -       -      -
----------------------------------------------------------
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Residues in contact with PHE 180 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    524D  GLU*     4.4    19.1    -      -       +      -
    528D  CYS*     6.4     1.1    -      -       -      -
    531D  PHE*     5.9     9.6    -      +       -      -
     32E  TYR*     3.2    18.0    +      -       +      +
     33E  TRP*     6.1     0.2    -      -       +      -
    153E  ILE*     4.9    13.9    -      -       +      -
    156E  TYR*     4.4    26.2    -      +       -      -
    157E  ILE*     4.6    17.9    -      -       +      -
    176E  TYR*     4.1    31.6    -      +       +      -
    177E  GLY      3.1    16.3    +      -       -      +
    178E  TRP      3.0     0.2    -      -       -      -
    179E  SER*     1.3    74.2    -      -       -      +
    181E  TYR*     1.3    91.3    +      +       -      +
    183E  GLY*     3.0    12.6    +      -       -      -
    184E  ALA*     3.0    13.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with TYR 181 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    523D  TYR*     3.9    12.5    +      -       -      -
    524D  GLU*     3.8    32.1    +      -       -      -
    176E  TYR*     5.2    12.6    -      -       +      +
    177E  GLY      3.9     5.5    +      -       -      -
    178E  TRP*     3.3    26.3    +      +       +      +
    180E  PHE*     1.3    99.7    -      +       -      +
    182E  PHE*     1.3    57.5    +      -       -      +
    184E  ALA*     3.2    12.0    +      -       +      +
    185E  LEU*     2.9    28.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with PHE 182 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     23E  LEU*     4.5    23.9    -      -       +      +
     26E  ILE*     6.0     1.6    -      -       +      -
     27E  ALA*     4.8     2.7    -      -       +      +
    178E  TRP      2.9    15.0    +      -       -      +
    179E  SER*     3.4    17.5    -      -       -      +
    180E  PHE      3.0     0.2    -      -       -      -
    181E  TYR*     1.3    77.2    -      -       -      +
    183E  GLY*     1.3    57.2    +      -       -      +
    185E  LEU*     3.1    10.6    +      -       -      +
    186E  SER*     2.9    27.8    +      -       -      -
----------------------------------------------------------
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Residues in contact with GLY 183 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     24E  MET*     5.4     0.4    -      -       -      -
     27E  ALA*     4.1    14.0    -      -       -      +
    149E  ASN*     4.1     6.0    +      -       -      -
    179E  SER      2.9    15.2    +      -       -      -
    180E  PHE      3.0     3.5    +      -       -      -
    182E  PHE*     1.3    74.7    -      -       -      +
    184E  ALA*     1.3    61.9    +      -       -      +
    186E  SER*     2.2    30.1    +      -       -      -
    187E  PHE*     2.9     8.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 184 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    531D  PHE*     3.6    33.0    -      -       +      -
    180E  PHE*     3.0    12.7    +      -       +      +
    181E  TYR*     3.3    20.0    -      -       +      +
    182E  PHE      3.2     0.2    -      -       -      -
    183E  GLY*     1.3    76.1    -      -       -      +
    185E  LEU*     1.3    62.9    +      -       -      +
    187E  PHE*     2.8    19.3    +      -       -      +
    188E  ILE*     2.9    20.4    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 185 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     23E  LEU*     4.3    22.9    -      -       +      -
    181E  TYR      2.9    13.7    +      -       -      +
    182E  PHE*     3.1    11.2    +      -       -      +
    184E  ALA*     1.3    74.8    -      -       -      +
    186E  SER*     1.3    64.1    +      -       -      +
    188E  ILE*     3.2    16.3    +      -       +      +
    189E  ILE*     2.9    47.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with SER 186 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     20E  ALA*     4.0    25.6    -      -       -      +
     23E  LEU*     4.0    15.8    -      -       -      +
     24E  MET*     4.0    12.3    -      -       -      +
    115E  LEU*     5.9     2.0    -      -       -      -
    149E  ASN*     3.5    15.0    +      -       -      -
    182E  PHE      2.9    12.2    +      -       -      -
    183E  GLY*     2.2    32.7    +      -       -      -
    185E  LEU*     1.3    75.8    -      -       -      +
    187E  PHE*     1.3    55.9    +      -       -      +
    189E  ILE*     5.0     0.2    -      -       -      -
    190E  ALA*     2.8    34.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with PHE 187 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    531D  PHE*     3.7    50.7    -      +       +      -
    534D  ILE*     4.5    13.7    -      -       +      -
    535D  GLY*     4.3    15.7    -      -       -      -
    146E  GLY*     3.3    37.7    -      -       -      -
    147E  LEU*     4.2     4.0    -      -       -      -
    149E  ASN*     4.4     9.6    -      -       +      +
    150E  ILE*     3.4    26.0    -      -       +      +
    183E  GLY      3.8     6.3    -      -       -      +
    184E  ALA*     2.8    13.4    +      -       -      +
    186E  SER*     1.3    82.9    +      -       -      +
    188E  ILE*     1.3    69.4    +      -       +      +
    190E  ALA*     3.6     2.9    -      -       -      +
    191E  GLU*     2.9    33.3    +      -       +      +
----------------------------------------------------------
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Residues in contact with ILE 188 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    530D  VAL*     6.5     0.9    -      -       +      -
    531D  PHE*     5.2    10.5    -      -       +      -
    534D  ILE*     5.8    12.1    -      -       +      +
    184E  ALA*     2.9    19.8    +      -       +      +
    185E  LEU*     3.7    18.4    -      -       +      +
    187E  PHE*     1.3    87.8    -      -       +      +
    189E  ILE*     1.3    73.6    +      -       +      +
    191E  GLU*     3.8     3.4    -      -       -      +
    192E  MET*     2.9    27.4    +      -       +      +
----------------------------------------------------------
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Residues in contact with ILE 189 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     16E  GLY*     4.1    24.9    -      -       -      -
     19E  ALA*     6.0     1.8    -      -       +      -
     20E  ALA*     4.3    13.5    -      -       +      +
     23E  LEU*     5.3     5.4    -      -       +      -
    185E  LEU*     2.9    41.0    +      -       +      +
    186E  SER*     4.4     1.1    -      -       -      +
    188E  ILE*     1.3    78.1    -      -       +      +
    190E  ALA*     1.3    62.3    +      -       -      +
    192E  MET*     3.9     6.1    -      -       +      +
    193E  VAL*     2.9    24.4    +      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 190 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     16E  GLY      5.5     0.2    -      -       -      -
     20E  ALA*     4.4    11.4    -      -       +      +
    115E  LEU*     4.7    18.8    -      -       +      -
    142E  PHE*     2.9    27.6    -      -       +      +
    143E  VAL*     6.1     0.4    -      -       -      -
    146E  GLY*     5.1     9.0    -      -       -      -
    149E  ASN*     6.1     0.4    -      -       -      +
    186E  SER      2.8    22.5    +      -       -      +
    187E  PHE*     3.6     4.7    -      -       -      +
    189E  ILE*     1.3    80.4    -      -       -      +
    191E  GLU*     1.3    64.7    +      -       -      +
    193E  VAL*     3.1     0.8    +      -       -      -
    194E  GLY      2.9    17.8    +      -       -      -
----------------------------------------------------------
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Residues in contact with GLU 191 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    534D  ILE*     4.8    11.9    -      -       +      -
    535D  GLY*     5.9     1.6    -      -       -      -
    538D  VAL*     4.4    22.5    -      -       +      +
    143E  VAL*     4.5    13.8    -      -       +      +
    146E  GLY*     5.7     3.7    -      -       -      -
    187E  PHE*     2.9    32.9    +      -       +      +
    188E  ILE      3.8     2.5    -      -       -      +
    190E  ALA*     1.3    71.8    -      -       -      +
    192E  MET*     1.3    64.8    +      -       -      +
    194E  GLY*     3.0     4.9    +      -       -      -
    195E  VAL*     2.9    26.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with MET 192 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    538D  VAL*     6.0     0.2    -      -       -      -
    188E  ILE*     2.9    21.2    +      -       +      +
    189E  ILE*     3.9     7.0    -      -       +      +
    191E  GLU*     1.3    74.9    -      -       -      +
    193E  VAL*     1.3    63.1    +      -       -      +
    195E  VAL*     2.9    22.1    +      -       -      +
    196E  LEU*     3.0    14.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 193 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     12E  LEU      4.9     7.0    -      -       -      +
     13E  THR*     4.6    13.3    +      -       +      +
     16E  GLY*     4.5    20.0    -      -       -      -
     17E  ALA      5.1     0.2    -      -       -      +
    142E  PHE*     4.0    13.5    -      -       +      -
    189E  ILE*     2.9    20.7    +      -       +      +
    190E  ALA*     3.5     4.3    -      -       -      +
    192E  MET*     1.3    75.9    -      -       -      +
    194E  GLY*     1.3    56.9    +      -       -      +
    196E  LEU*     3.5     7.4    +      -       -      +
    197E  ALA*     2.9    28.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLY 194 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    139E  GLY*     5.7     0.4    -      -       -      -
    142E  PHE*     3.3    22.6    -      -       -      -
    143E  VAL*     3.6    15.5    -      -       -      -
    190E  ALA      2.9    10.9    +      -       -      -
    191E  GLU      3.0     4.5    +      -       -      -
    193E  VAL*     1.3    74.9    -      -       -      +
    195E  VAL*     1.3    65.9    +      -       -      +
    197E  ALA*     3.1     6.0    +      -       -      +
    198E  VAL*     2.9    29.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 195 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    538D  VAL*     3.6    34.3    -      -       +      -
    541D  PHE*     4.5    10.9    -      -       +      -
    573D  ILE*     3.8    34.1    -      -       +      -
    143E  VAL*     4.6     0.4    -      -       -      +
    191E  GLU      2.9    18.4    +      -       -      +
    192E  MET*     2.9    14.1    +      -       -      +
    194E  GLY*     1.3    75.6    -      -       -      +
    196E  LEU*     1.3    63.6    +      -       -      +
    198E  VAL*     3.2     9.6    -      -       -      +
    199E  HIS*     2.9    26.9    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 196 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      9E  GLN*     5.6     7.6    -      -       +      +
     12E  LEU*     6.1     4.9    -      -       +      -
     13E  THR*     5.3     4.5    -      -       -      +
    192E  MET      3.0    11.1    +      -       -      +
    193E  VAL*     3.9     9.4    -      -       -      +
    195E  VAL*     1.3    78.6    -      -       -      +
    197E  ALA*     1.3    56.4    +      -       -      +
    199E  HIS*     3.3     7.8    +      -       -      +
    200E  MET*     2.9    36.9    +      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 197 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     13E  THR*     4.5    22.0    +      -       +      +
    135E  ILE*     5.9     3.2    -      -       -      +
    138E  ALA*     6.2     2.0    -      -       +      -
    139E  GLY*     5.4     6.1    -      -       -      +
    142E  PHE*     5.6     2.2    -      -       +      -
    193E  VAL      2.9    19.2    +      -       -      +
    194E  GLY*     3.1     9.8    +      -       -      +
    196E  LEU*     1.3    75.6    -      -       -      +
    198E  VAL*     1.3    62.1    +      -       +      +
    200E  MET*     2.8    28.2    +      -       -      +
    201E  PHE*     2.9     9.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 198 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    538D  VAL*     6.5     0.2    -      -       +      -
    541D  PHE*     4.9    13.0    -      -       +      -
    542D  LEU*     3.6    34.1    -      -       +      -
    135E  ILE      5.3     2.7    -      -       -      +
    136E  LEU*     5.3     4.0    -      -       -      +
    139E  GLY*     3.6    30.5    -      -       -      +
    143E  VAL*     5.2     0.7    -      -       +      -
    194E  GLY      2.9    19.5    +      -       -      +
    195E  VAL*     3.2    20.0    -      -       -      +
    197E  ALA*     1.3    71.4    -      -       -      +
    199E  HIS*     1.3    62.3    +      -       -      +
    201E  PHE*     3.0    13.2    +      -       +      +
    202E  ILE*     2.9    30.1    +      -       +      +
----------------------------------------------------------
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Residues in contact with HIS 199 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    541D  PHE*     4.7    21.3    -      +       +      -
    573D  ILE*     5.9     5.6    -      -       +      -
    195E  VAL*     2.9    21.0    +      -       +      +
    196E  LEU*     3.3    10.1    +      -       -      +
    198E  VAL*     1.3    78.5    -      -       +      +
    200E  MET*     1.3    62.4    +      -       -      +
    202E  ILE*     3.1    18.2    -      -       +      +
    203E  ASP*     2.8    62.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with MET 200 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      6E  ARG      4.3     6.7    -      -       -      +
      7E  GLY*     5.5     0.7    -      -       -      -
      9E  GLN*     3.5    31.6    -      -       +      +
     10E  MET*     3.5    37.5    -      -       +      +
     13E  THR*     4.0     9.4    -      -       -      -
    196E  LEU*     2.9    18.8    +      -       -      +
    197E  ALA*     2.8    17.5    +      -       -      +
    199E  HIS*     1.3    73.5    -      -       -      +
    201E  PHE*     1.3    60.1    +      -       -      +
    203E  ASP*     3.2    11.1    +      -       -      +
    204E  ARG*     2.9    23.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with PHE 201 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    546D  PHE*     5.7     9.2    -      -       +      -
    548D  PRO      5.4     7.0    -      -       -      -
    132E  HIS      3.1    26.9    -      -       -      -
    133E  ASN*     4.0     7.9    -      -       +      -
    135E  ILE*     3.6    20.4    -      -       +      +
    136E  LEU*     3.4    46.4    -      -       +      +
    197E  ALA      2.9     7.1    +      -       -      +
    198E  VAL*     3.0    19.3    +      -       +      +
    200E  MET*     1.3    75.4    -      -       -      +
    202E  ILE*     1.3    77.9    +      -       +      +
    204E  ARG*     3.0     9.4    +      -       +      +
    205E  HIS*     2.9    35.3    +      -       +      +
----------------------------------------------------------
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Residues in contact with ILE 202 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    541D  PHE*     6.5     1.6    -      -       +      -
    545D  ARG*     3.3    28.9    -      -       +      +
    546D  PHE*     4.7     6.1    -      -       +      -
    548D  PRO*     6.1     4.7    -      -       +      -
    198E  VAL*     2.9    16.6    +      -       +      +
    199E  HIS*     3.1    38.8    -      -       +      +
    201E  PHE*     1.3    88.8    -      -       +      +
    203E  ASP*     1.3    77.1    +      -       -      +
    205E  HIS*     4.0     6.2    -      -       +      +
    206E  LYS*     2.9    31.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with ASP 203 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    199E  HIS*     2.8    50.7    +      -       -      +
    200E  MET*     3.3    12.8    -      -       -      +
    201E  PHE      3.1     0.2    -      -       -      -
    202E  ILE*     1.3    90.6    -      -       -      +
    204E  ARG*     1.3    57.0    +      -       -      +
    206E  LYS*     3.7     5.2    -      -       -      +
    207E  GLN*     2.9    28.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 204 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    132E  HIS*     6.2     4.5    -      -       +      -
    200E  MET      2.9    13.9    +      -       -      +
    201E  PHE*     3.0     9.4    +      -       +      +
    203E  ASP*     1.3    73.9    -      -       -      +
    205E  HIS*     1.3    59.9    +      -       -      +
    207E  GLN*     2.8    24.2    +      -       -      +
    208E  LEU*     2.9    14.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with HIS 205 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    548D  PRO*     5.2    13.9    -      -       +      +
    132E  HIS*     5.9     4.0    -      -       -      +
    201E  PHE*     2.9    29.3    +      -       +      +
    202E  ILE*     4.0     8.1    -      -       +      +
    204E  ARG*     1.3    76.2    -      -       -      +
    206E  LYS*     1.3    57.2    +      -       -      +
    208E  LEU*     3.5     5.7    +      -       -      +
    209E  ARG*     2.9    29.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 206 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    202E  ILE      2.9    20.5    +      -       -      +
    203E  ASP*     3.7     5.2    -      -       -      +
    205E  HIS*     1.3    72.6    -      -       -      +
    207E  GLN*     1.3    61.6    +      -       -      +
    209E  ARG*     3.5     6.6    -      -       -      +
    210E  ALA*     2.9    33.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 207 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    203E  ASP      2.9    13.3    +      -       -      +
    204E  ARG*     2.8    15.2    +      -       -      +
    206E  LYS*     1.3    77.8    -      -       -      +
    208E  LEU*     1.3    56.3    +      -       -      +
    210E  ALA*     3.9     2.6    -      -       -      +
    211E  THR*     2.8    31.0    +      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 208 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    204E  ARG      2.9    13.3    +      -       -      +
    205E  HIS*     4.0     5.2    -      -       -      +
    207E  GLN*     1.3    74.3    -      -       -      +
    209E  ARG*     1.3    65.7    +      -       -      +
    211E  THR*     3.1     7.7    +      -       -      -
    212E  ALA*     2.9    23.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 209 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    205E  HIS      2.9    20.1    +      -       -      +
    206E  LYS*     3.2     9.2    +      -       -      +
    208E  LEU*     1.3    76.2    -      -       -      +
    210E  ALA*     1.3    62.7    +      -       -      +
    212E  ALA*     3.1    20.5    +      -       -      +
    213E  ARG*     4.1     2.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 210 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    206E  LYS      2.9    18.2    +      -       -      +
    207E  GLN*     4.4     2.7    -      -       -      +
    209E  ARG*     1.3    75.4    -      -       -      +
    211E  THR*     1.3    59.9    +      -       -      +
    212E  ALA      3.1     1.4    +      -       -      -
    213E  ARG*     3.4    19.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with THR 211 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    207E  GLN      2.8    22.3    +      -       -      -
    208E  LEU*     3.1    12.1    +      -       -      -
    210E  ALA*     1.3    76.0    -      -       -      +
    212E  ALA*     1.3    59.6    +      -       -      +
    213E  ARG      3.4     2.2    -      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 212 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    208E  LEU      2.9     9.5    +      -       -      +
    209E  ARG*     3.4    13.5    -      -       -      +
    210E  ALA      3.1     0.8    -      -       -      -
    211E  THR*     1.3    78.2    -      -       -      +
    213E  ARG*     1.3    67.3    +      -       -      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il