Contacts of the helix formed by residues 134 - 184 (chain Z) in PDB entry 6CP3
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLU 134 (chain Z).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377 ASP* 3.1 42.7 - - + +
387 GLU* 3.3 29.1 - - - +
407 ARG* 4.6 7.4 + - - +
417 ARG* 3.4 31.5 + - + +
130Z THR 3.7 17.3 - - - +
131Z VAL 3.8 7.5 + - - +
132Z GLU 3.2 2.0 - - - -
133Z LEU* 1.3 84.1 - - + +
135Z SER* 1.3 62.7 + - - +
136Z GLU 3.1 1.8 - - - +
137Z ALA* 2.9 25.9 + - + +
138Z PHE* 3.0 10.6 + - - +
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Residues in contact with SER 135 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
847 ASP* 4.1 10.5 - - - -
857 ALA* 5.1 11.2 - - - -
131Z VAL 5.1 1.0 + - - -
132Z GLU* 4.4 11.0 + - - -
134Z GLU* 1.3 74.3 - - - +
136Z GLU* 1.3 62.5 + - - +
138Z PHE* 3.2 17.1 + - - +
139Z GLU* 2.9 33.7 + - - +
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Residues in contact with GLU 136 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
847 ASP* 3.2 31.4 - - - +
857 ALA 6.0 1.2 - - - -
867 SER* 5.5 5.7 + - - -
132Z GLU 3.8 3.6 - - - +
133Z LEU* 3.0 55.7 - - - +
134Z GLU 3.4 0.9 + - - -
135Z SER* 1.3 74.0 + - - +
137Z ALA* 1.3 56.8 + - - +
139Z GLU* 3.3 4.3 + - - +
140Z LEU* 2.9 26.4 + - - +
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Residues in contact with ALA 137 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
407 ARG* 4.2 6.5 - - - +
417 ARG* 3.6 35.2 - - + +
447 LEU* 3.5 9.9 - - + +
134Z GLU* 2.9 20.9 + - + +
136Z GLU* 1.3 73.6 - - - +
138Z PHE* 1.3 60.8 + - - +
140Z LEU* 3.3 15.1 - - + +
141Z LYS* 2.8 26.7 + - - +
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Residues in contact with PHE 138 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
646 ALA* 3.7 21.8 - - + -
656 LYS* 4.2 17.0 - - + -
666 GLU* 6.0 0.2 - - - -
676 SER* 5.3 6.3 - - - -
407 ARG* 4.0 20.3 - - - +
134Z GLU 3.0 6.9 + - - +
135Z SER* 3.2 22.6 + - - +
137Z ALA* 1.3 77.6 - - - +
139Z GLU* 1.3 86.9 + - + +
141Z LYS* 3.0 51.4 + - - +
142Z GLN* 3.2 11.1 + - + +
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Residues in contact with GLU 139 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
646 ALA* 3.7 5.8 - - - +
666 GLU* 4.4 1.9 - - - +
817 VAL* 4.4 6.8 - - - +
827 LYS* 3.0 63.4 + - - +
837 ILE 3.6 13.9 - - - +
847 ASP* 3.8 13.9 - - + +
135Z SER* 2.9 19.8 + - - +
136Z GLU* 3.6 3.8 - - - +
138Z PHE* 1.3 98.8 - - + +
140Z LEU* 1.3 62.5 + - - +
142Z GLN* 3.8 16.2 + - - +
143Z LYS* 3.9 7.8 + - - +
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Residues in contact with LEU 140 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
417 ARG 5.8 0.4 - - - +
447 LEU* 4.1 16.4 - - + -
457 GLU* 4.3 23.6 - - + -
517 THR* 5.9 0.9 - - + -
136Z GLU 2.9 13.7 + - - +
137Z ALA* 3.3 16.4 - - + +
139Z GLU* 1.3 76.7 - - - +
141Z LYS* 1.3 60.3 + - - +
142Z GLN 3.2 0.2 - - - -
143Z LYS* 3.0 36.9 + - - +
144Z VAL* 2.9 35.0 + - + +
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Residues in contact with LYS 141 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
407 ARG* 5.5 2.2 - - - +
447 LEU* 3.6 32.3 - - + +
137Z ALA 2.8 14.1 + - - +
138Z PHE* 3.0 46.3 + - - +
140Z LEU* 1.3 75.5 - - - +
142Z GLN* 1.3 63.6 + - - +
144Z VAL* 3.2 6.8 + - + +
145Z GLU* 2.9 41.6 + - + +
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Residues in contact with GLN 142 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
606 THR 5.1 0.8 + - - -
626 HIS* 3.2 38.6 + - - +
636 VAL 5.0 0.2 - - - -
646 ALA* 4.0 20.6 - - + +
787 TYR* 4.1 8.1 - - + +
817 VAL* 3.7 18.4 - - + -
827 LYS* 5.3 0.7 - - + -
138Z PHE 3.2 10.2 + - - +
139Z GLU* 3.9 20.6 - - - +
140Z LEU 3.2 0.4 - - - -
141Z LYS* 1.3 85.5 + - - +
143Z LYS* 1.3 61.2 + - - +
145Z GLU* 2.4 36.0 + - - +
146Z LEU* 3.1 26.7 + - - +
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Residues in contact with LYS 143 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
517 THR* 3.4 31.0 + - - +
787 TYR* 6.3 0.2 - - - -
797 LYS 5.4 1.6 - - - +
817 VAL* 3.8 33.8 - - + +
139Z GLU 3.9 4.6 + - - +
140Z LEU* 3.0 34.0 + - - +
142Z GLN* 1.3 75.5 - - - +
144Z VAL* 1.3 65.8 + - - +
146Z LEU* 4.4 4.0 - - - +
147Z ALA* 3.5 20.3 + - - +
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Residues in contact with VAL 144 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
447 LEU* 4.2 17.3 - - + +
457 GLU* 6.0 0.2 - - - -
477 GLN* 4.1 18.4 - - - +
487 SER* 3.7 35.2 + - - +
517 THR* 4.1 10.5 - - + -
140Z LEU* 2.9 30.9 + - + +
141Z LYS* 3.4 13.7 - - + +
142Z GLN 3.2 0.2 - - - -
143Z LYS* 1.3 78.0 - - - +
145Z GLU* 1.3 61.0 + - + +
147Z ALA* 3.3 5.7 + - - +
148Z HIS* 2.9 28.2 + - + +
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Residues in contact with GLU 145 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
606 THR 5.2 1.6 - - - +
626 HIS* 5.6 0.7 - - - +
141Z LYS* 2.9 32.6 + - + +
142Z GLN* 2.4 42.7 + - - +
144Z VAL* 1.3 76.5 - - + +
146Z LEU* 1.3 66.4 + - - +
148Z HIS* 3.3 8.1 + - - +
149Z GLU* 2.9 43.2 + - + +
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Residues in contact with LEU 146 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
596 GLU* 3.3 35.8 - - + +
606 THR 3.7 12.6 - - - +
616 ALA* 4.1 12.3 - - + +
626 HIS 5.3 0.4 - - - +
747 TYR* 4.9 4.5 - - + -
757 VAL* 4.9 20.4 - - + -
787 TYR* 3.6 35.0 - - + +
142Z GLN* 3.1 18.8 + - - +
143Z LYS* 4.4 4.3 - - - +
144Z VAL 3.3 0.2 - - - -
145Z GLU* 1.3 87.4 - - - +
147Z ALA* 1.3 56.5 + - - +
149Z GLU* 3.2 6.5 + - + +
150Z ALA* 3.0 26.8 + - + +
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Residues in contact with ALA 147 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
487 SER* 5.8 0.4 - - - +
497 GLN* 6.5 1.1 - - + -
517 THR* 3.7 33.2 - - + +
527 GLU* 4.2 5.2 - - - +
757 VAL* 5.7 6.5 - - + -
143Z LYS 3.5 16.7 + - - +
144Z VAL 3.3 4.6 + - - +
146Z LEU* 1.3 74.7 - - - +
148Z HIS* 1.3 60.5 + - - +
150Z ALA* 3.4 8.1 + - - +
151Z LYS* 2.9 29.1 + - - +
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Residues in contact with HIS 148 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
477 GLN* 4.8 15.7 - - - +
497 GLN* 5.0 14.6 - - - +
144Z VAL* 2.9 17.6 + - + +
145Z GLU* 3.5 12.8 - - - +
146Z LEU 3.2 0.2 - - - -
147Z ALA* 1.3 75.9 - - - +
149Z GLU* 1.3 69.0 + - - +
151Z LYS* 3.4 12.1 + - + +
152Z ALA* 2.9 34.2 + - + +
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Residues in contact with GLU 149 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
566 GLN* 3.5 37.0 + - - +
596 GLU* 4.7 16.6 - - + +
606 THR* 5.9 0.9 - - - +
145Z GLU* 2.9 30.0 + - - +
146Z LEU* 3.6 10.1 - - + +
148Z HIS* 1.3 83.1 + - - +
150Z ALA* 1.3 58.5 + - - +
152Z ALA* 3.3 6.1 + - - +
153Z VAL* 3.0 34.7 + - - +
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Residues in contact with ALA 150 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
596 GLU* 3.7 27.5 - - - +
537 VAL* 4.3 23.1 - - + -
717 ILE* 4.6 3.2 - - + +
757 VAL* 4.6 9.6 - - + -
146Z LEU* 3.0 16.5 + - + +
147Z ALA* 3.6 9.2 - - - +
148Z HIS 3.3 0.2 - - - -
149Z GLU* 1.3 77.5 - - - +
151Z LYS* 1.3 56.0 + - - +
153Z VAL* 3.3 3.3 - - - +
154Z LEU* 3.0 31.8 + - - +
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Residues in contact with LYS 151 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
497 GLN* 5.0 22.4 - - + +
537 VAL* 5.7 0.9 - - - +
587 TYR* 3.3 30.0 + - + +
147Z ALA 2.9 17.9 + - - +
148Z HIS* 3.7 13.2 - - + +
149Z GLU 3.3 0.2 - - - -
150Z ALA* 1.3 75.6 - - - +
152Z ALA* 1.3 60.6 + - - +
154Z LEU* 4.7 1.1 - - - -
155Z ASP* 2.9 42.1 + - + +
----------------------------------------------------------
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Residues in contact with ALA 152 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
516 LYS* 5.7 0.5 - - - -
566 GLN* 4.6 14.8 - - - +
148Z HIS* 2.9 26.5 + - + +
149Z GLU* 3.6 9.9 - - - +
150Z ALA 3.3 0.2 - - - -
151Z LYS* 1.3 80.4 - - - +
153Z VAL* 1.3 58.6 + - - +
155Z ASP* 3.4 7.2 + - - +
156Z SER* 3.0 25.1 + - - -
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Residues in contact with VAL 153 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
516 LYS* 5.6 2.9 - - + -
566 GLN* 3.3 44.0 - - + +
576 ASN* 3.3 25.8 - - - +
596 GLU* 3.5 21.8 - - + +
717 ILE* 4.7 5.8 - - + -
149Z GLU 3.0 19.3 + - - +
150Z ALA 3.3 10.3 - - - +
152Z ALA* 1.3 76.3 - - - +
154Z LEU* 1.3 58.8 + - - +
156Z SER* 3.1 10.3 + - - -
157Z TRP* 2.9 36.0 + - + +
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Residues in contact with LEU 154 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
537 VAL* 3.8 24.7 - - + -
587 TYR* 3.1 38.4 - - + +
627 LEU* 4.5 0.9 - - + -
677 VAL* 5.0 0.2 - - + -
687 ILE* 3.6 40.8 - - + -
717 ILE* 4.4 13.9 - - + -
150Z ALA 3.0 19.1 + - - +
153Z VAL* 1.3 74.3 - - - +
155Z ASP* 1.3 61.0 + - - +
157Z TRP* 3.1 26.5 + - + +
158Z VAL* 3.0 31.2 + - + +
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Residues in contact with ASP 155 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
587 TYR* 2.8 15.7 + - - +
151Z LYS* 2.9 27.2 + - + +
152Z ALA* 3.5 7.6 - - - +
154Z LEU* 1.3 75.6 - - - +
156Z SER* 1.3 57.7 + - - +
158Z VAL* 3.3 7.6 + - - +
159Z ARG* 2.9 42.8 + - - +
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Residues in contact with SER 156 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
476 PRO* 4.6 10.3 - - - +
506 LEU* 4.8 4.0 - - - +
516 LYS* 3.3 45.5 - - - +
576 ASN* 6.0 0.2 - - - -
152Z ALA 3.0 14.3 + - - -
153Z VAL* 3.1 11.9 + - - -
155Z ASP* 1.3 77.0 + - - +
157Z TRP* 1.3 57.7 + - - +
159Z ARG* 3.6 6.7 - - - +
160Z TYR* 2.9 29.6 + - - +
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Residues in contact with TRP 157 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
446 LEU* 4.8 13.9 - - + -
476 PRO* 3.6 34.3 - - + -
486 GLU* 5.7 13.0 - - + -
576 ASN* 5.2 10.0 + - + +
627 LEU* 3.8 25.8 - - + +
647 ASN 5.8 2.5 - - - -
657 THR 5.5 1.6 - - - -
667 SER* 6.4 0.9 - - - -
677 VAL* 3.5 41.8 - - + +
717 ILE* 5.6 3.3 - - + +
153Z VAL* 2.9 39.5 + - + +
154Z LEU* 3.1 28.2 + - + +
156Z SER* 1.3 77.9 - - - +
158Z VAL* 1.3 58.1 + - - +
160Z TYR* 3.3 10.3 + + - +
161Z GLU* 2.9 27.7 + - - +
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Residues in contact with VAL 158 (chain Z).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
587 TYR* 4.2 21.5 - - + +
617 VAL* 3.8 34.5 - - + -
627 LEU* 4.8 10.1 - - + -
154Z LEU* 3.0 16.6 + - + +
155Z ASP* 3.3 10.7 + - - +
157Z TRP* 1.3 75.5 - - + +
159Z ARG* 1.3 63.6 + - - +
161Z GLU* 3.2 11.1 + - - +
162Z ALA* 3.0 22.6 + - + +
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Residues in contact with ARG 159 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120B LYS* 6.1 3.6 - - - +
223B GLU* 4.2 18.2 + - - -
155Z ASP* 2.9 32.1 + - - +
156Z SER* 3.6 9.0 - - - +
158Z VAL* 1.3 76.5 - - - +
160Z TYR* 1.3 56.7 + - - +
162Z ALA* 3.3 13.0 + - - +
163Z SER* 3.0 36.8 + - - +
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Residues in contact with TYR 160 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396 LEU* 5.0 1.4 - - - +
436 GLU* 2.3 59.5 + - - +
446 LEU* 5.1 5.2 - - + -
466 GLY* 4.8 1.6 - - - -
476 PRO* 3.6 40.4 - - + -
506 LEU* 5.4 11.0 - - + -
156Z SER* 2.9 17.9 + - - +
157Z TRP* 3.8 10.5 - + - +
158Z VAL 3.3 0.2 - - - -
159Z ARG* 1.3 74.7 - - - +
161Z GLU* 1.3 63.6 + - - +
163Z SER* 3.3 11.8 + - - -
164Z LEU* 2.9 53.1 + - + +
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Residues in contact with GLU 161 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
617 VAL* 3.2 23.1 - - - +
627 LEU* 3.3 19.9 - - + +
637 LYS* 3.2 34.7 + - - +
647 ASN* 4.6 11.2 + - - +
157Z TRP 2.9 14.2 + - - +
158Z VAL* 3.2 11.8 + - - +
160Z TYR* 1.3 79.6 - - - +
162Z ALA* 1.3 58.0 + - - +
164Z LEU* 3.2 8.3 + - + +
165Z ARG* 3.0 52.3 + - + +
----------------------------------------------------------
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Residues in contact with ALA 162 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
158Z VAL* 3.0 14.0 + - + +
159Z ARG* 3.7 16.8 - - - +
160Z TYR 3.3 0.2 - - - -
161Z GLU* 1.3 76.4 - - - +
163Z SER* 1.3 57.2 - - - +
165Z ARG* 3.3 9.4 + - - +
166Z GLN* 3.0 26.7 + - - +
----------------------------------------------------------
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Residues in contact with SER 163 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
300E LYS* 5.7 3.3 + - - -
159Z ARG* 3.0 22.2 + - - +
160Z TYR* 3.6 19.2 - - - -
161Z GLU 3.3 0.2 - - - -
162Z ALA* 1.3 77.2 - - - +
164Z LEU* 1.3 57.2 + - - +
166Z GLN* 3.2 7.1 + - - +
167Z LEU* 3.0 39.8 + - - +
----------------------------------------------------------
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Residues in contact with LEU 164 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396 LEU* 4.8 32.6 - - + +
446 LEU* 6.4 2.2 - - + -
647 ASN* 5.0 14.4 - - - +
160Z TYR* 2.9 47.4 + - + +
161Z GLU* 3.7 8.3 - - + +
163Z SER* 1.3 74.2 - - - +
165Z ARG* 1.3 69.3 + - - +
167Z LEU* 3.3 9.0 + - - +
168Z GLU* 2.9 29.6 + - + +
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Residues in contact with ARG 165 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
637 LYS* 3.9 27.7 - - - +
647 ASN* 5.3 5.5 - - - +
4B LYS* 4.4 21.0 - - - +
6B GLN* 4.5 15.2 + - - -
7B PRO* 6.2 3.5 - - - +
161Z GLU* 3.0 48.0 + - + +
162Z ALA* 3.6 9.9 - - - +
163Z SER 3.3 0.2 - - - -
164Z LEU* 1.3 83.5 - - + +
166Z GLN* 1.3 56.4 + - - +
168Z GLU* 3.3 10.5 + - - +
169Z GLN* 3.0 28.2 + - - +
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Residues in contact with GLN 166 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119B GLY* 4.8 14.0 - - - +
193Y ASP 5.1 5.0 + - - +
162Z ALA 3.0 13.8 + - - +
163Z SER* 3.5 11.7 - - - +
165Z ARG* 1.3 75.6 - - - +
167Z LEU* 1.3 62.7 + - + +
169Z GLN* 3.2 28.9 + - - +
170Z ARG* 3.0 34.5 + - - +
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Residues in contact with LEU 167 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
386 ASN* 6.3 0.2 - - - +
396 LEU* 3.8 32.1 - - + -
436 GLU* 5.6 5.8 - - + -
163Z SER* 3.0 31.7 + - - +
164Z LEU* 3.7 10.1 - - - +
165Z ARG 3.3 0.2 - - - -
166Z GLN* 1.3 79.7 - - + +
168Z GLU* 1.3 59.3 + - - +
170Z ARG* 3.2 41.7 - - - +
171Z GLN* 3.0 36.6 + - - +
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Residues in contact with GLU 168 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
226 GLN* 5.7 0.3 - - - +
396 LEU* 5.4 5.3 - - + +
4B LYS* 2.9 52.6 + - + +
7B PRO* 4.9 4.9 - - - +
164Z LEU* 2.9 21.5 + - + +
165Z ARG* 3.3 11.3 + - - +
167Z LEU* 1.3 74.9 - - - +
169Z GLN* 1.3 65.1 + - - +
171Z GLN* 3.4 10.5 + - - +
172Z LEU* 3.0 55.7 + - + +
----------------------------------------------------------
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Residues in contact with GLN 169 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7B PRO* 5.9 9.2 - - + -
191Y LEU 3.4 23.2 + - - +
192Y GLU* 4.1 3.8 - - - +
193Y ASP 2.8 32.2 + - - +
165Z ARG 3.0 17.4 + - - +
166Z GLN* 3.2 28.8 + - - +
167Z LEU 3.2 0.2 - - - -
168Z GLU* 1.3 84.8 + - - +
170Z ARG* 1.3 60.3 + - - +
172Z LEU* 3.4 5.4 + - - +
173Z ALA* 2.9 28.7 + - - +
----------------------------------------------------------
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Residues in contact with ARG 170 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
166Z GLN* 3.0 22.0 + - - +
167Z LEU* 3.2 54.9 - - - +
169Z GLN* 1.3 78.1 + - - +
171Z GLN* 1.3 77.7 + - - +
173Z ALA* 3.2 9.6 + - + +
174Z LYS* 3.0 32.6 + - - +
----------------------------------------------------------
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Residues in contact with GLN 171 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
316 TRP* 3.3 40.8 - - + -
356 GLN* 3.7 15.3 + - - +
386 ASN* 4.8 11.5 + - - +
396 LEU* 4.1 26.9 - - - +
167Z LEU* 3.0 22.6 + - - +
168Z GLU* 3.7 9.4 - - - +
170Z ARG* 1.3 92.8 - - - +
172Z LEU* 1.3 64.6 + - + +
174Z LYS* 3.2 20.3 - - - +
175Z SER* 2.9 26.2 + - - -
----------------------------------------------------------
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Residues in contact with LEU 172 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
186 PRO* 5.0 18.2 - - + -
216 LEU* 6.4 2.0 - - + -
226 GLN* 5.8 2.2 - - - +
316 TRP* 6.0 1.8 - - + -
4B LYS 4.8 0.2 - - - +
5B ALA* 5.2 3.8 - - + -
8B THR* 3.7 28.5 - - + -
168Z GLU* 3.0 46.4 + - + +
169Z GLN* 3.6 5.8 - - - +
170Z ARG 3.3 0.2 - - - -
171Z GLN* 1.3 81.3 - - + +
173Z ALA* 1.3 59.8 + - - +
175Z SER* 3.6 10.8 - - - -
176Z VAL* 2.8 33.1 + - + +
179Z ARG* 3.4 8.2 + - - +
----------------------------------------------------------
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Residues in contact with ALA 173 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
191Y LEU 4.8 3.8 - - - +
192Y GLU* 4.4 17.9 - - + +
169Z GLN* 2.9 25.1 + - - +
170Z ARG* 3.4 14.8 - - + +
171Z GLN 3.2 0.2 - - - -
172Z LEU* 1.3 74.8 - - - +
174Z LYS* 1.3 62.4 + - - +
176Z VAL* 3.0 22.8 + - - +
177Z ILE* 3.1 16.8 + - - +
----------------------------------------------------------
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Residues in contact with LYS 174 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
316 TRP* 3.6 45.8 - - + +
170Z ARG* 3.0 21.5 + - - +
171Z GLN* 3.2 21.8 - - - +
173Z ALA* 1.3 76.2 - - - +
175Z SER* 1.3 55.8 + - - +
177Z ILE* 3.3 14.3 + - + +
178Z SER* 3.0 28.4 + - - -
----------------------------------------------------------
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Residues in contact with SER 175 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
176 ALA 5.4 0.5 - - - -
186 PRO* 3.5 16.1 - - - +
216 LEU* 6.5 0.9 - - - -
316 TRP* 5.2 9.4 - - - +
171Z GLN 2.9 18.1 + - - -
172Z LEU* 3.5 9.0 - - - -
174Z LYS* 1.3 76.7 - - - +
176Z VAL* 1.3 56.5 + - - +
178Z SER* 3.2 10.8 + - - -
179Z ARG* 2.4 62.1 + - - -
----------------------------------------------------------
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Residues in contact with VAL 176 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146 THR* 5.8 4.5 - - + -
187Y LEU* 5.8 1.6 - - + +
188Y ASN* 3.5 30.3 - - - +
191Y LEU* 4.5 19.5 - - + +
192Y GLU* 4.9 7.0 - - - +
172Z LEU* 2.8 20.2 + - + +
173Z ALA* 3.3 13.0 - - - +
175Z SER* 1.3 72.7 - - - +
177Z ILE* 1.3 63.2 + - + +
179Z ARG* 3.1 21.7 + - + +
180Z VAL* 2.9 31.4 + - + +
----------------------------------------------------------
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Residues in contact with ILE 177 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
188Y ASN* 5.4 7.4 - - - +
192Y GLU* 5.8 3.8 - - - +
173Z ALA 3.1 13.7 + - - +
174Z LYS* 3.3 14.6 - - + +
176Z VAL* 1.3 80.2 - - + +
178Z SER* 1.3 57.1 + - - +
180Z VAL* 3.2 14.2 + - + +
181Z GLN* 3.0 38.5 + - + +
----------------------------------------------------------
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Residues in contact with SER 178 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
306 PRO* 5.6 10.5 - - - +
316 TRP* 5.5 4.2 + - - -
174Z LYS 3.0 14.5 + - - -
175Z SER* 3.2 15.6 + - - -
177Z ILE* 1.3 77.5 - - - +
179Z ARG* 1.3 58.0 + - - +
181Z GLN* 3.3 9.8 + - - +
182Z SER* 2.9 31.9 + - - -
----------------------------------------------------------
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Residues in contact with ARG 179 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136 ASP* 3.9 23.3 - - + +
146 THR* 2.8 50.3 + - - +
176 ALA* 3.7 24.2 - - + -
186 PRO* 3.4 11.7 - - - +
172Z LEU* 3.4 13.1 + - - +
175Z SER* 2.4 47.1 + - - -
176Z VAL* 3.1 40.9 + - + +
178Z SER* 1.3 75.6 - - - +
180Z VAL* 1.3 59.8 + - + +
182Z SER* 3.5 9.2 - - - -
183Z GLU* 2.9 37.6 + - + +
----------------------------------------------------------
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Residues in contact with VAL 180 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
184Y ILE* 4.6 22.9 - - + -
188Y ASN* 4.6 18.8 - - - +
176Z VAL* 2.9 22.7 + - + +
177Z ILE* 3.4 16.8 - - + +
179Z ARG* 1.3 74.4 - - + +
181Z GLN* 1.3 65.0 + - - +
183Z GLU* 3.3 5.2 + - - +
184Z LEU* 3.0 53.5 + - + +
----------------------------------------------------------
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Residues in contact with GLN 181 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
177Z ILE* 3.0 28.6 + - + +
178Z SER* 3.5 11.0 - - - +
180Z VAL* 1.3 83.8 - - - +
182Z SER* 1.3 60.3 + - - +
184Z LEU* 4.0 11.6 + - - +
185Z GLY* 4.2 6.6 + - - -
----------------------------------------------------------
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Residues in contact with SER 182 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136 ASP* 5.8 7.9 - - - -
178Z SER* 2.9 25.0 + - - -
179Z ARG* 3.5 12.8 - - - +
180Z VAL 3.2 0.2 - - - -
181Z GLN* 1.3 77.5 - - - +
183Z GLU* 1.3 62.4 + - - +
185Z GLY* 3.9 4.3 + - - -
186Z ASN* 2.9 18.9 + - - +
----------------------------------------------------------
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Residues in contact with GLU 183 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96 ARG 3.6 7.4 - - - +
106 GLU* 3.7 16.9 - - + +
136 ASP* 2.9 32.3 - - + +
184Y ILE* 6.3 2.2 - - + -
179Z ARG* 2.9 23.9 + - + +
180Z VAL* 3.3 5.4 + - - +
182Z SER* 1.3 79.1 - - - +
184Z LEU* 1.3 67.6 + - + +
185Z GLY 3.1 0.3 + - - -
186Z ASN* 2.9 25.2 + - - +
188Z LYS* 2.4 44.3 + - - +
189Z PHE 5.8 0.2 + - - -
----------------------------------------------------------
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Residues in contact with LEU 184 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
164Y LYS* 5.0 17.0 - - + +
180Y ILE* 6.1 2.2 - - + -
184Y ILE* 4.3 21.8 - - + -
180Z VAL* 3.0 39.1 + - + +
181Z GLN* 4.0 9.1 + - - +
182Z SER 3.4 0.6 - - - -
183Z GLU* 1.3 80.1 - - + +
185Z GLY* 1.3 58.3 + - - +
186Z ASN 3.3 3.2 + - - +
189Z PHE* 5.8 3.4 - - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il