Contacts of the helix formed by residues 210 - 247 (chain X) in PDB entry 6CP3
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PHE 210 (chain X).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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208X PHE* 3.2 4.8 - - - -
209X GLY* 1.3 77.9 - - - +
211X VAL* 1.3 68.5 + - + +
212X PRO 3.4 0.9 - - - -
213X LEU* 2.9 48.0 + - + +
214X ALA* 3.1 26.8 + - + -
217X LEU* 6.2 2.9 - - + -
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Residues in contact with VAL 211 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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208X PHE* 4.2 15.3 - - + +
210X PHE* 1.3 81.5 - - + +
212X PRO* 1.3 69.5 - - + +
214X ALA* 3.9 7.9 - - + +
215X MET* 3.0 27.0 + - - +
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Residues in contact with PRO 212 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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194X LEU* 5.5 7.2 - - + -
195X THR* 3.8 24.5 - - + -
198X PHE* 5.0 19.7 - - + -
208X PHE 5.1 0.2 - - - +
209X GLY* 3.9 15.3 - - - +
210X PHE 3.7 3.1 - - - -
211X VAL* 1.3 95.6 - - + +
213X LEU* 1.3 58.4 + - - +
215X MET* 3.5 19.7 - - + +
216X ILE* 2.9 36.6 + - + +
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Residues in contact with LEU 213 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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195X THR* 5.2 2.2 - - + +
209X GLY 4.7 3.7 + - - +
210X PHE* 2.9 39.4 + - + +
212X PRO* 1.3 78.9 - - - +
214X ALA* 1.3 57.6 + - - +
216X ILE* 3.4 4.8 + - + -
217X LEU* 2.9 27.1 + - - +
57Z ILE* 3.9 22.0 - - + -
60Z LEU* 3.8 28.5 - - + -
61Z THR* 3.7 29.5 - - + +
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Residues in contact with ALA 214 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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210X PHE* 3.1 32.1 + - + +
211X VAL* 4.1 10.1 - - + +
213X LEU* 1.3 74.1 - - - +
215X MET* 1.3 59.8 + - - +
217X LEU* 3.3 17.6 - - + +
218X ALA* 2.9 27.4 + - - +
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Residues in contact with MET 215 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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63R LEU* 4.4 36.1 - - + +
67R MET* 5.4 8.5 - - + -
191X LEU* 3.8 26.9 - - + -
194X LEU* 5.6 8.1 - - + -
211X VAL 3.0 19.7 + - - +
212X PRO* 3.5 21.5 - - + +
213X LEU 3.2 0.4 - - - -
214X ALA* 1.3 76.8 - - - +
216X ILE* 1.3 56.9 + - + +
218X ALA* 3.2 9.3 + - + +
219X ILE* 2.9 37.1 + - + +
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Residues in contact with ILE 216 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
188X MET* 4.9 12.1 - - + +
191X LEU* 4.0 27.4 - - + +
192X ALA* 4.4 4.7 - - + +
195X THR* 3.7 29.2 - - + +
212X PRO* 2.9 17.7 + - + +
213X LEU* 4.0 4.9 - - - +
215X MET* 1.3 74.3 - - + +
217X LEU* 1.3 60.8 + - - +
219X ILE* 3.1 22.9 + - + +
220X MET* 2.9 27.2 + - - +
57Z ILE* 5.2 7.4 - - + -
58Z LEU* 4.1 26.0 - - + -
61Z THR* 4.5 11.5 + - + -
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Residues in contact with LEU 217 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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210X PHE* 6.2 2.9 - - + -
213X LEU 2.9 15.0 + - - +
214X ALA* 3.3 20.0 - - + +
216X ILE* 1.3 76.8 - - - +
218X ALA* 1.3 57.5 + - - +
220X MET* 3.2 9.7 + - + +
221X MET* 2.9 34.4 + - + +
61Z THR* 3.6 33.3 - - - +
64Z GLY* 4.8 1.8 - - - -
65Z PHE* 3.7 27.8 - - + +
68Z LEU* 4.2 20.9 - - + -
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Residues in contact with ALA 218 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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60R ALA* 5.7 9.6 - - + -
63R LEU* 6.3 2.5 - - + -
214X ALA 2.9 14.2 + - - +
215X MET* 3.2 10.5 + - + +
217X LEU* 1.3 73.6 - - - +
219X ILE* 1.3 60.8 + - + +
221X MET* 3.3 13.0 - - + +
222X LEU* 2.9 28.1 + - - +
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Residues in contact with ILE 219 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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64R PHE* 4.7 13.0 - - + -
187X LEU* 3.7 32.8 - - + +
188X MET* 3.6 29.4 - - + -
191X LEU* 3.7 31.9 - - + -
215X MET* 2.9 25.8 + - + +
216X ILE* 3.1 19.5 + - + +
218X ALA* 1.3 76.8 - - - +
220X MET* 1.3 56.7 + - - +
222X LEU* 3.3 9.6 + - + +
223X GLU* 2.8 28.5 + - - +
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Residues in contact with MET 220 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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104X MET* 4.0 21.8 - - - +
106X PRO* 5.0 0.9 - - + -
188X MET* 4.6 10.5 - - - -
216X ILE 2.9 12.2 + - - +
217X LEU* 3.2 11.0 + - + +
219X ILE* 1.3 73.8 - - - +
221X MET* 1.3 60.9 + - - +
223X GLU* 3.0 9.4 + - + +
224X PHE* 3.0 45.1 + - + -
58Z LEU* 4.0 27.6 - - + +
61Z THR* 4.3 6.3 - - - +
62Z PHE* 3.7 44.0 - - + -
65Z PHE* 4.5 20.2 - - + -
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Residues in contact with MET 221 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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57R LEU* 5.9 1.0 - - - +
217X LEU* 2.9 24.5 + - + +
218X ALA* 3.3 15.9 - - + +
220X MET* 1.3 78.5 - - - +
222X LEU* 1.3 59.3 + - - +
224X PHE* 3.5 13.2 + - - +
225X ALA* 3.6 9.9 + - - +
65Z PHE* 3.5 34.3 - - + -
68Z LEU* 6.5 0.4 - - - -
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Residues in contact with LEU 222 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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57R LEU* 4.6 30.1 - - + +
60R ALA* 4.7 13.7 - - + -
61R THR* 5.5 1.1 - - + -
64R PHE* 4.4 26.7 - - + -
55S PHE* 6.0 1.1 - - + -
59S GLU* 3.9 27.8 - - + +
63S LEU* 5.4 5.4 - - + -
187X LEU* 6.0 2.9 - - + -
218X ALA 2.9 16.5 + - - +
219X ILE* 3.7 8.7 - - + +
221X MET* 1.3 75.3 - - - +
223X GLU* 1.3 64.1 + - - +
224X PHE 3.3 0.2 - - - -
225X ALA* 3.2 9.5 + - + +
226X ILE* 2.9 38.7 + - + +
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Residues in contact with GLU 223 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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104X MET* 3.6 33.3 - - + +
181X ILE* 4.2 6.1 - - - +
184X GLY* 3.3 34.4 - - - +
185X HIS* 4.1 4.2 + - - -
187X LEU* 5.1 2.9 - - - +
188X MET* 3.7 23.9 - - + +
219X ILE* 2.8 20.9 + - - +
220X MET* 3.0 13.6 + - + +
222X LEU* 1.3 79.0 - - - +
224X PHE* 1.3 59.8 + - - +
226X ILE* 3.2 25.4 - - - +
227X GLY 2.9 22.7 + - - -
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Residues in contact with PHE 224 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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101X LEU* 4.3 17.7 - - + -
104X MET* 3.5 41.7 - - + -
220X MET* 3.0 23.7 + - + -
221X MET* 3.9 10.3 - - - +
222X LEU 3.3 0.2 - - - -
223X GLU* 1.3 77.2 - - - +
225X ALA* 1.3 56.8 + - - +
227X GLY* 3.3 1.0 + - - -
228X ILE* 2.9 44.7 + - + +
62Z PHE* 5.1 9.9 - + - -
65Z PHE* 3.4 41.3 - + - -
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Residues in contact with ALA 225 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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57R LEU* 4.8 15.5 - - + -
55S PHE* 5.4 5.2 - - + -
221X MET 3.6 7.7 + - - +
222X LEU* 3.2 17.3 + - + +
224X PHE* 1.3 78.4 - - - +
226X ILE* 1.3 58.9 + - - +
228X ILE* 5.0 0.4 - - - -
229X ILE* 2.9 55.9 + - + +
230X GLN* 3.6 1.6 + - - +
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Residues in contact with ILE 226 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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56S ALA* 6.2 0.9 - - + -
59S GLU* 5.2 9.9 - - + -
60S ALA* 4.8 7.0 - - + -
63S LEU* 5.3 7.0 - - + -
100X ASN* 4.6 1.0 + - - -
177X LEU* 5.3 0.3 - - - +
180X ASN* 3.7 34.8 - - + +
181X ILE* 4.0 17.7 - - + +
184X GLY* 5.3 0.7 - - - -
222X LEU* 2.9 24.8 + - + +
223X GLU* 3.2 46.7 - - - +
225X ALA* 1.3 74.7 - - - +
227X GLY* 1.3 57.7 + - - +
230X GLN* 3.2 45.7 - - + +
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Residues in contact with GLY 227 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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96X ILE 5.0 1.6 - - - +
97X PHE* 5.7 2.2 - - - -
100X ASN* 3.7 38.6 + - - +
101X LEU* 6.5 0.2 - - - -
104X MET* 5.3 0.4 - - - -
181X ILE* 5.2 1.1 - - - -
223X GLU 2.9 13.8 + - - -
224X PHE 3.7 2.7 - - - -
225X ALA 3.1 0.4 - - - -
226X ILE* 1.3 80.2 - - - +
228X ILE* 1.3 65.1 + - - +
230X GLN* 3.5 1.9 + - - +
231X GLY* 3.0 19.4 + - - -
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Residues in contact with ILE 228 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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93X PHE* 4.8 6.8 - - + -
97X PHE* 3.7 37.4 - - + -
101X LEU* 5.0 15.0 - - + -
224X PHE* 2.9 33.7 + - + +
225X ALA* 5.0 0.2 - - - -
227X GLY* 1.3 73.4 - - - +
229X ILE* 1.3 67.6 + - + +
231X GLY* 3.1 4.0 + - - -
232X TYR* 3.0 26.9 + - + +
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Residues in contact with ILE 229 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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57R LEU* 6.4 0.2 - - + -
52S ILE* 4.4 37.0 - - + +
53S LEU* 4.8 11.0 - - + -
55S PHE* 5.4 4.9 - - + -
56S ALA* 3.7 23.8 - - + -
225X ALA* 2.9 34.3 + - + +
228X ILE* 1.3 85.1 - - + +
230X GLN* 1.3 58.0 + - - +
232X TYR* 3.3 9.2 + - + +
233X VAL* 2.8 34.9 + - + +
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Residues in contact with GLN 230 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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56S ALA* 3.1 35.5 + - + +
60S ALA* 3.4 14.8 - - - +
176X ARG* 3.4 18.0 - - - +
177X LEU* 3.4 27.2 - - + +
180X ASN* 3.0 22.5 + - + +
225X ALA 3.6 1.4 + - - +
226X ILE* 3.2 47.0 - - + +
227X GLY 3.5 1.5 + - - +
228X ILE 3.2 0.2 - - - -
229X ILE* 1.3 76.3 - - - +
231X GLY* 1.3 59.4 + - - +
233X VAL* 3.3 7.8 + - - +
234X TRP 2.9 23.0 + - - -
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Residues in contact with GLY 231 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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93X PHE* 3.8 15.2 - - - -
96X ILE* 3.9 27.9 - - - +
97X PHE* 5.5 2.5 - - - -
177X LEU* 4.3 0.6 - - - +
227X GLY 3.0 15.4 + - - -
228X ILE 3.1 3.8 + - - -
230X GLN* 1.3 75.7 - - - +
232X TYR* 1.3 56.7 + - - +
234X TRP* 3.2 6.6 + - - +
235X ALA* 3.0 26.2 + - - +
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Residues in contact with TYR 232 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1737 MET* 4.3 19.1 - - + +
49S PRO* 5.8 7.6 - - + -
53S LEU* 3.9 27.8 - - + -
68X THR* 4.3 17.3 - - + -
69X ILE* 5.7 4.3 - - + -
72X MET* 3.3 39.8 - - + +
93X PHE* 3.8 20.8 - + + -
228X ILE* 3.0 14.4 + - + +
229X ILE* 3.7 12.3 - - + +
230X GLN 3.3 0.2 - - - -
231X GLY* 1.3 73.2 - - - +
233X VAL* 1.3 60.6 + - - +
235X ALA* 3.3 5.5 + - + +
236X ILE* 2.9 39.6 + - + +
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Residues in contact with VAL 233 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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53S LEU* 3.7 21.8 - - + +
56S ALA* 4.0 18.4 - - + -
57S LEU* 3.7 31.6 - - + -
176X ARG* 4.3 25.6 - - - +
229X ILE 2.8 20.8 + - - +
230X GLN* 3.4 10.3 - - - +
232X TYR* 1.3 72.8 - - - +
234X TRP* 1.3 66.3 + - - +
236X ILE* 3.3 8.2 - - + +
237X LEU* 3.0 30.9 + - + +
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Residues in contact with TRP 234 (chain X).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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92X LEU* 4.2 17.5 - - + +
93X PHE* 5.6 0.4 - - - -
96X ILE* 3.6 28.3 - - + +
118X ILE* 4.5 14.8 - - + -
121X LEU* 4.5 6.3 - - + -
122X SER* 3.7 25.1 - - - -
125X ILE* 3.6 32.6 - - + +
173X LEU* 3.2 60.0 - - + +
174X GLY* 3.5 7.2 - - - -
176X ARG* 5.7 0.2 - - - -
177X LEU* 4.1 18.4 - - + -
230X GLN 2.9 13.7 + - - +
231X GLY* 3.3 12.6 - - - +
233X VAL* 1.3 77.5 - - - +
235X ALA* 1.3 67.0 + - + +
237X LEU* 4.0 1.0 - - - +
238X THR* 3.0 34.9 + - + +
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Residues in contact with ALA 235 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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69X ILE* 6.3 0.4 - - + -
72X MET* 4.2 12.3 - - + -
89X ILE* 3.3 24.7 - - + +
92X LEU 6.4 0.2 - - - -
93X PHE* 4.0 24.0 - - + -
231X GLY 3.0 13.6 + - - +
232X TYR* 3.6 11.2 - - + +
233X VAL 3.3 0.2 - - - -
234X TRP* 1.3 79.5 - - - +
236X ILE* 1.3 57.6 + - - +
238X THR* 3.3 5.0 - - - +
239X ALA* 2.9 29.5 + - - +
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Residues in contact with ILE 236 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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53S LEU* 4.2 21.3 - - + -
48T PHE* 4.6 15.7 - - + -
52T ILE* 5.4 6.3 - - + +
72X MET* 3.7 24.4 - - + +
76X GLN* 3.6 37.0 + - + +
232X TYR* 2.9 29.2 + - + +
233X VAL* 3.3 17.9 - - - +
235X ALA* 1.3 76.1 - - - +
237X LEU* 1.3 75.2 + - + +
239X ALA* 3.2 4.7 + - - +
240X SER* 3.0 22.0 + - - -
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Residues in contact with LEU 237 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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57S LEU* 4.5 6.1 - - + -
52T ILE* 4.4 17.3 - - + -
55T PHE* 3.7 31.9 - - + -
173X LEU* 3.9 25.1 - - + -
176X ARG* 4.0 14.1 - - - +
233X VAL* 3.0 35.6 + - + +
236X ILE* 1.3 88.5 - - + +
238X THR* 1.3 59.5 + - - +
240X SER* 3.2 6.9 + - - -
241X TYR* 2.9 57.4 + - + +
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Residues in contact with THR 238 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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89X ILE* 3.6 18.2 - - + -
92X LEU* 5.1 9.8 - - + +
125X ILE* 4.0 18.5 - - - +
129X ASN* 4.8 0.3 + - - -
173X LEU* 4.8 8.9 - - - +
234X TRP* 3.0 33.6 + - + +
235X ALA* 3.3 10.8 - - - +
237X LEU* 1.3 73.6 - - - +
239X ALA* 1.3 60.0 + - - +
241X TYR* 3.6 15.1 - - - +
242X LEU* 2.9 45.2 + - + +
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Residues in contact with ALA 239 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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72X MET* 4.0 23.6 - - + -
73X THR* 4.7 7.2 - - - +
76X GLN* 4.1 15.9 - - + -
77X ILE* 3.4 15.1 - - + +
89X ILE* 4.8 5.8 - - + -
235X ALA 2.9 18.6 + - - +
236X ILE 3.3 7.6 - - - +
237X LEU 3.2 0.2 - - - -
238X THR* 1.3 78.2 - - - +
240X SER* 1.3 61.9 - - - +
242X LEU* 3.3 6.1 + - - +
243X LYS* 3.0 18.5 + - - +
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Residues in contact with SER 240 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52T ILE* 3.6 34.9 + - - +
76X GLN* 4.7 9.7 - - - +
236X ILE 3.0 12.6 + - - -
237X LEU* 3.2 8.3 + - - -
239X ALA* 1.3 75.9 - - - +
241X TYR* 1.3 64.7 + - - +
243X LYS* 3.3 15.5 + - - +
244X ASP* 3.0 39.3 + - - +
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Residues in contact with TYR 241 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52T ILE 6.2 0.2 - - - -
56T ALA* 4.8 16.2 - - + +
125X ILE* 6.4 0.4 - - + -
126X TRP* 6.3 0.9 - + - -
129X ASN* 4.7 14.2 - - + +
169X ARG* 3.5 60.1 + - + +
173X LEU* 4.0 26.8 - - + +
237X LEU* 2.9 49.6 + - + +
238X THR* 3.6 13.0 - - - +
239X ALA 3.2 0.2 - - - -
240X SER* 1.3 86.2 - - - +
242X LEU* 1.3 56.6 + - - +
244X ASP* 3.4 8.9 + - - +
245X ALA* 2.9 30.3 + - - +
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Residues in contact with LEU 242 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16J PHE* 4.8 2.0 - - + -
77X ILE* 4.7 9.2 - - + -
85X TYR* 3.7 37.7 - - + +
88X MET* 3.8 25.6 - - + -
89X ILE* 5.6 7.0 - - + -
125X ILE* 5.5 0.7 - - + -
129X ASN* 3.4 24.7 - - - +
132X LEU* 5.7 2.7 - - + -
238X THR* 2.9 38.9 + - + +
239X ALA* 3.3 7.8 + - - +
241X TYR* 1.3 74.1 - - - +
243X LYS* 1.3 60.8 + - - +
245X ALA* 4.3 4.7 - - + -
246X VAL* 2.9 40.6 + - + +
----------------------------------------------------------
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Residues in contact with LYS 243 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
49T PRO* 3.8 35.1 - - - +
52T ILE* 5.9 1.6 - - - +
76X GLN* 3.2 32.6 + - - +
77X ILE* 3.7 30.2 - - + +
239X ALA 3.0 14.6 + - - +
240X SER* 3.3 18.1 + - - +
242X LEU* 1.3 76.0 - - - +
244X ASP* 1.3 66.1 + - - +
246X VAL* 5.1 2.0 - - - -
247X TYR* 3.0 39.2 + - + +
----------------------------------------------------------
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Residues in contact with ASP 244 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
53T LEU* 5.6 5.7 - - - +
141X PHE* 4.7 2.8 - - - -
144X LEU* 3.9 30.6 - - + +
169X ARG* 4.9 15.1 + - - +
240X SER* 3.0 29.7 + - - +
241X TYR* 3.8 10.2 - - - +
242X LEU 3.3 0.2 - - - -
243X LYS* 1.3 85.2 - - - +
245X ALA* 1.3 60.9 + - - +
247X TYR 2.9 18.7 - - - +
248X LEU* 4.6 3.8 - - - +
249X HIS* 5.2 12.5 + - - +
----------------------------------------------------------
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Residues in contact with ALA 245 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129X ASN* 3.9 35.0 - - + +
132X LEU* 5.7 3.8 - - + -
133X GLY* 3.5 23.5 - - - +
137X HIS* 4.2 2.9 + - - -
141X PHE* 3.6 18.1 - - + -
144X LEU* 5.7 0.2 - - - -
241X TYR 2.9 18.6 + - - +
242X LEU* 3.3 6.5 + - - +
244X ASP* 1.3 78.6 - - - +
246X VAL* 1.3 63.2 + - + +
248X LEU* 5.0 0.2 - - - +
----------------------------------------------------------
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Residues in contact with VAL 246 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
81X ASN* 5.8 1.1 - - - +
85X TYR* 4.4 26.7 - - + -
132X LEU* 4.4 16.4 - - + -
136X LYS* 3.3 33.9 - - - +
137X HIS* 2.9 21.3 + - - -
242X LEU* 2.9 25.2 + - + +
243X LYS* 4.5 2.0 - - - +
245X ALA* 1.3 79.6 - - + +
247X TYR* 1.3 88.9 + - + +
----------------------------------------------------------
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Residues in contact with TYR 247 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77X ILE* 4.3 12.8 - - + -
78X GLY 4.9 1.3 - - - -
79X GLY* 3.7 28.3 - - - -
80X LYS* 4.0 3.9 + - - +
81X ASN* 2.6 31.5 + - - -
136X LYS* 5.5 2.7 - - + -
137X HIS* 4.6 1.8 - + - -
243X LYS* 3.0 23.6 + - + +
244X ASP* 2.9 19.7 - - - +
246X VAL* 1.3 102.2 - - + +
248X LEU* 1.3 63.1 + - - +
249X HIS* 3.2 10.6 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il