Analysis of interatomic Contacts of Structural Units in PDB entry:
1A07


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1A07 entry

There are 4 chains in PDB entry 1A07 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 145PRO 249
C
GLU 102GLU 102
B
ILE 146PRO 249
D
GLU 102GLU 102
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 1A07. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
146 148Right-handed 310
Helix 2
2
A
158 165Right-handed alpha
Helix 3
3
A
226 235Right-handed alpha
Helix 4
4
B
158 165Right-handed alpha
Helix 5
5
B
226 235Right-handed alpha
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There are 4 sheets in PDB entry 1A07. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
175 179first strand
Strand 2
A
187 195anti-parallel
Strand 3
A
199 207anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
215 218first strand
Strand 2
A
221 223anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
175 179first strand
Strand 2
B
187 195anti-parallel
Strand 3
B
199 207anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
215 218first strand
Strand 2
B
221 223anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il