Analysis of interatomic Contacts of Structural Units in PDB entry:
1A47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1A47 entry

There is 1 chain in PDB entry 1A47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLN 683
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 1A47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 24Right-handed 310
Helix 2
2
A
36 38Right-handed 310
Helix 3
3
A
54 62Right-handed alpha
Helix 4
4
A
65 69Right-handed alpha
Helix 5
5
A
116 129Right-handed alpha
Helix 6
6
A
189 192Right-handed alpha
Helix 7
7
A
206 222Right-handed alpha
Helix 8
8
A
237 251Right-handed alpha
Helix 9
9
A
268 276Right-handed alpha
Helix 10
10
A
284 294Right-handed alpha
Helix 11
11
A
301 314Right-handed alpha
Helix 12
12
A
318 320Right-handed 310
Helix 13
13
A
340 351Right-handed alpha
Helix 14
14
A
373 375Right-handed 310
Helix 15
15
A
386 400Right-handed alpha
Helix 16
16
A
402 406Right-handed alpha
Helix 17
17
A
608 610Right-handed 310
Helix 18
18
A
615 617Right-handed 310
Back to top of page

There are 11 sheets in PDB entry 1A47. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 359first strand
Strand 2
A
16 20parallel
Strand 3
A
73 76parallel
Strand 4
A
132 137parallel
Strand 5
A
226 229parallel
Strand 6
A
254 257parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 492first strand
Strand 2
A
428 435anti-parallel
Strand 3
A
418 425anti-parallel
Strand 4
A
408 414anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 444first strand
Strand 2
A
480 482anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 456first strand
Strand 2
A
469 471anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 510first strand
Strand 2
A
576 579parallel
Strand 3
A
556 558anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 505first strand
Strand 2
A
514 520anti-parallel
Strand 3
A
545 549anti-parallel
Strand 4
A
537 541anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
528 531first strand
Strand 2
A
560 563anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
633 640first strand
Strand 2
A
583 591anti-parallel
Strand 3
A
675 680parallel
Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
600 605first strand
Strand 2
A
644 652anti-parallel
Strand 3
A
665 668anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
650 652first strand
Strand 2
A
657 659anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 160first strand
Strand 2
A
163 166anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il