Analysis of interatomic Contacts of Structural Units in PDB entry:
1A8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1A8H entry

There is 1 chain in PDB entry 1A8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1A8H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 38Right-handed alpha
Helix 2
2
A
54 62Right-handed alpha
Helix 3
3
A
67 84Right-handed alpha
Helix 4
4
A
98 113Right-handed alpha
Helix 5
5
A
164 176Right-handed 310
Helix 6
6
A
184 193Right-handed alpha
Helix 7
7
A
227 238Right-handed alpha
Helix 8
8
A
244 252Right-handed alpha
Helix 9
9
A
259 266Right-handed 310
Helix 10
10
A
268 276Right-handed alpha
Helix 11
11
A
308 315Right-handed alpha
Helix 12
12
A
317 327Right-handed alpha
Helix 13
13
A
338 347Right-handed alpha
Helix 14
14
A
354 367Right-handed alpha
Helix 15
15
A
379 396Right-handed 310
Helix 16
16
A
400 421Right-handed alpha
Helix 17
17
A
423 429Right-handed alpha
Helix 18
18
A
431 453Right-handed alpha
Helix 19
19
A
457 466Right-handed alpha
Helix 20
20
A
475 479Right-handed 310
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There are 4 sheets in PDB entry 1A8H. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 287first strand
Strand 2
A
253 258parallel
Strand 3
A
4 8parallel
Strand 4
A
42 49parallel
Strand 5
A
91 94parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
48 50parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 161first strand
Strand 2
A
117 127anti-parallel
Strand 3
A
132 134anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 206first strand
Strand 2
A
222 224anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il