Analysis of interatomic Contacts of Structural Units in PDB entry:
1AMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AMP entry

There is 1 chain in PDB entry 1AMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1AMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A
A
7 13Right-handed alpha
Helix 2
B
A
19 30Right-handed alpha
Helix 3
C
A
40 57Right-handed alpha
Helix 4
D
A
119 134Right-handed alpha
Helix 5
E
A
156 167Right-handed alpha
Helix 6
F
A
199 212Right-handed alpha
Helix 7
G
A
230 235Right-handed alpha
Helix 8
H
A
270 287Right-handed alpha
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There is 1 sheet ( SH) in PDB entry 1AMP.

There are 8 strands in SH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 68first strand
Strand 2
A
77 82anti-parallel
Strand 3
A
141 148anti-parallel
Strand 4
A
87 97parallel
Strand 5
A
171 177parallel
Strand 6
A
240 244parallel
Strand 7
A
190 193anti-parallel
Strand 8
A
218 221parallel
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