Analysis of interatomic Contacts of Structural Units in PDB entry:
1AMU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AMU entry

There are 2 chains in PDB entry 1AMU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 17PHE 530
B
 GLY 17PHE 530
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 1AMU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 29Right-handed alpha
Helix 2
2
A
41 51Right-handed alpha
Helix 3
3
A
67 83Right-handed alpha
Helix 4
4
A
100 111Right-handed alpha
Helix 5
5
A
125 135Right-handed alpha
Helix 6
6
A
144 152Right-handed 310
Helix 7
7
A
205 216Right-handed alpha
Helix 8
8
A
235 245Right-handed alpha
Helix 9
9
A
256 259Right-handed alpha
Helix 10
10
A
262 271Right-handed alpha
Helix 11
11
A
281 286Right-handed alpha
Helix 12
12
A
307 313Right-handed alpha
Helix 13
13
A
326 328Right-handed 310
Helix 14
14
A
390 396Right-handed alpha
Helix 15
15
A
429 431Right-handed 310
Helix 16
16
A
442 451Right-handed alpha
Helix 17
17
A
484 494Right-handed alpha
Helix 18
18
A
497 499Right-handed 310
Helix 19
19
A
520 522Right-handed 310
Helix 20
20
B
20 29Right-handed alpha
Helix 21
21
B
41 51Right-handed alpha
Helix 22
22
B
67 84Right-handed alpha
Helix 23
23
B
100 111Right-handed alpha
Helix 24
24
B
125 135Right-handed alpha
Helix 25
25
B
144 150Right-handed 310
Helix 26
26
B
204 216Right-handed alpha
Helix 27
27
B
235 245Right-handed alpha
Helix 28
28
B
256 259Right-handed alpha
Helix 29
29
B
262 271Right-handed alpha
Helix 30
30
B
281 286Right-handed alpha
Helix 31
31
B
307 313Right-handed alpha
Helix 32
32
B
326 328Right-handed 310
Helix 33
33
B
390 396Right-handed alpha
Helix 34
34
B
429 431Right-handed 310
Helix 35
35
B
442 451Right-handed alpha
Helix 36
36
B
484 494Right-handed alpha
Helix 37
37
B
497 499Right-handed 310
Helix 38
38
B
520 522Right-handed 310
Back to top of page

There are 19 sheets in PDB entry 1AMU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 118first strand
Strand 2
A
91 95parallel
Strand 3
A
139 142parallel
Strand 4
A
158 161parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 228first strand
Strand 2
A
250 253parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 279first strand
Strand 2
A
297 301parallel
Strand 3
A
318 323parallel
Strand 4
A
333 336anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 360first strand
Strand 2
A
372 379anti-parallel
Strand 3
A
413 417anti-parallel
Strand 4
A
423 428anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 399first strand
Strand 2
A
407 409anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 435first strand
Strand 2
A
438 441anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
503 506first strand
Strand 2
A
470 478parallel
Strand 3
A
455 464anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
63 66anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 190first strand
Strand 2
A
198 203anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 118first strand
Strand 2
B
91 95parallel
Strand 3
B
139 142parallel
Strand 4
B
158 161parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 228first strand
Strand 2
B
250 253parallel
Back to list of sheets
Back to top of page

There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 279first strand
Strand 2
B
297 301parallel
Strand 3
B
318 323parallel
Strand 4
B
333 336anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
355 360first strand
Strand 2
B
374 379anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
397 399first strand
Strand 2
B
407 409anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
432 435first strand
Strand 2
B
438 441anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
503 506first strand
Strand 2
B
470 478parallel
Strand 3
B
455 464anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 60first strand
Strand 2
B
63 66anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 190first strand
Strand 2
B
198 203anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
413 417first strand
Strand 2
B
423 428anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il