Analysis of interatomic Contacts of Structural Units in PDB entry:
1B08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1B08 entry

There are 3 chains in PDB entry 1B08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 204PHE 355
B
 ALA 1205PHE 1355
C
 ARG 2208PHE 2355
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1B08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
206 233Right-handed alpha
Helix 2
2
A
254 263Right-handed alpha
Helix 3
3
A
274 287Right-handed alpha
Helix 4
4
A
325 327Right-handed 310
Helix 5
5
B
1207 1233Right-handed alpha
Helix 6
6
B
1254 1263Right-handed alpha
Helix 7
7
B
1274 1287Right-handed alpha
Helix 8
8
B
1325 1327Right-handed 310
Helix 9
9
C
2209 2233Right-handed 310
Helix 10
10
C
2254 2263Right-handed alpha
Helix 11
11
C
2274 2287Right-handed alpha
Helix 12
12
C
2325 2327Right-handed 310
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There are 7 sheets in PDB entry 1B08. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 240first strand
Strand 2
A
243 247anti-parallel
Strand 3
A
352 355anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 253first strand
Strand 2
A
348 350anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 334first strand
Strand 2
A
340 343anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1237 1240first strand
Strand 2
B
1243 1247anti-parallel
Strand 3
B
1352 1355anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1331 1334first strand
Strand 2
B
1340 1343anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2237 2240first strand
Strand 2
C
2243 2247anti-parallel
Strand 3
C
2352 2355anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2331 2334first strand
Strand 2
C
2340 2343anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il