Analysis of interatomic Contacts of Structural Units in PDB entry:
1BAG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BAG entry

There is 1 chain in PDB entry 1BAG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1ASP 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1BAG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 31Right-handed alpha
Helix 2
AA2
A
77 89Right-handed alpha
Helix 3
BH1
A
112 115Right-handed alpha
Helix 4
BA1
A
133 138Right-handed alpha
Helix 5
AA3
A
152 168Right-handed alpha
Helix 6
AA4
A
193 197Right-handed alpha
Helix 7
AA5
A
217 223Right-handed alpha
Helix 8
AA6
A
229 244Right-handed alpha
Helix 9
AH1
A
268 272Right-handed alpha
Helix 10
AA7
A
283 294Right-handed alpha
Helix 11
AA8
A
332 344Right-handed alpha
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There are 6 sheets in PDB entry 1BAG. Click on sheet of interest to get list of strands forming it: AS1, AS2, AS3, BS1, CS1, CS2,

There are 8 strands in AS1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
36 38parallel
Strand 3
A
93 98parallel
Strand 4
A
172 175parallel
Strand 5
A
204 207parallel
Strand 6
A
225 227parallel
Strand 7
A
261 263parallel
Strand 8
A
300 304parallel
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There are 2 strands in AS2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
A
64 67anti-parallel
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There are 2 strands in AS3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 71first strand
Strand 2
A
75 76anti-parallel
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There are 3 strands in BS1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
A
145 147anti-parallel
Strand 3
A
121 123anti-parallel
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There are 4 strands in CS1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 353first strand
Strand 2
A
361 366anti-parallel
Strand 3
A
370 375anti-parallel
Strand 4
A
418 422anti-parallel
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There are 4 strands in CS2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 386first strand
Strand 2
A
409 414anti-parallel
Strand 3
A
402 406anti-parallel
Strand 4
A
392 395anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il