Analysis of interatomic Contacts of Structural Units in PDB entry:
1BKD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BKD entry

There are 2 chains in PDB entry 1BKD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
R
MET 1HIS 166
S
ARG 568ASN 1044
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 1BKD. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
R
16 23Right-handed 310
Helix 2
2
R
65 74Right-handed 310
Helix 3
3
R
87 91Right-handed alpha
Helix 4
4
R
93 103Right-handed alpha
Helix 5
5
R
127 137Right-handed alpha
Helix 6
6
R
152 164Right-handed alpha
Helix 7
7
S
606 614Right-handed alpha
Helix 8
8
S
621 633Right-handed alpha
Helix 9
9
S
637 648Right-handed alpha
Helix 10
10
S
682 699Right-handed alpha
Helix 11
11
S
708 720Right-handed alpha
Helix 12
12
S
724 739Right-handed alpha
Helix 13
13
S
781 797Right-handed alpha
Helix 14
14
S
819 840Right-handed alpha
Helix 15
15
S
845 864Right-handed alpha
Helix 16
16
S
868 878Right-handed alpha
Helix 17
17
S
887 892Right-handed alpha
Helix 18
18
S
895 907Right-handed alpha
Helix 19
19
S
909 921Right-handed alpha
Helix 20
20
S
931 942Right-handed alpha
Helix 21
21
S
958 975Right-handed alpha
Helix 22
22
S
985 992Right-handed alpha
Helix 23
23
S
1002 1016Right-handed alpha
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There are 2 sheets in PDB entry 1BKD. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
141 145first strand
Strand 2
R
111 117parallel
Strand 3
R
77 83parallel
Strand 4
R
2 10parallel
Strand 5
R
49 56parallel
Strand 6
R
41 46anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
947 950first strand
Strand 2
S
953 956anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il