Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 1BM4 entry
There is 1 chain in PDB entry 1BM4
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
CYS 1 | TYR 32 |
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There are 10
helices in PDB entry 1BM4. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
1 | A
| 11 |
13 | Right-handed 310 |
Helix 2 |
2 | A
| 16 |
28 | Right-handed alpha |
Helix 3 |
3 | A
| 13 |
16 | Right-handed alpha |
Helix 4 |
4 | A
| 18 |
26 | Right-handed alpha |
Helix 5 |
5 | A
| 19 |
29 | Right-handed alpha |
Helix 6 |
9 | A
| 18 |
29 | Right-handed alpha |
Helix 7 |
7 | A
| 16 |
26 | Right-handed alpha |
Helix 8 |
8 | A
| 12 |
29 | Right-handed alpha |
Helix 9 |
12 | A
| 18 |
28 | Right-handed alpha |
Helix 10 |
11 | A
| 12 |
15 | Right-handed alpha |
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There are no sheets in PDB entry
1BM4
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il