Analysis of interatomic Contacts of Structural Units in PDB entry:
1BMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BMV entry

There are 3 chains in PDB entry 1BMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
M
G 1 C 11
1
SER 1001GLN 1185
2
MET 3001GLN 2192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 1BMV. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
A1
1
1054 1063Right-handed alpha
Helix 2
C1
2
3046 3051Right-handed alpha
Helix 3
C2
2
3058 3064Right-handed alpha
Helix 4
C3
2
3104 3108Right-handed alpha
Helix 5
C4
2
3144 3157Right-handed alpha
Helix 6
B1
2
2049 2057Right-handed alpha
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There are 4 sheets in PDB entry 1BMV. Click on sheet of interest to get list of strands forming it: S1, S3, S21, S22,

There are 11 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
1
1012 1016first strand
Strand 2
1
1156 1173anti-parallel
Strand 3
1
1065 1079anti-parallel
Strand 4
1
1115 1125anti-parallel
Strand 5
1
1106 1111anti-parallel
Strand 6
1
1090 1096anti-parallel
Strand 7
1
1145 1152anti-parallel
Strand 8
1
1028 1034anti-parallel
Strand 9
1
1038 1042anti-parallel
Strand 10
1
1048 1050anti-parallel
Strand 11
1
1012 1016anti-parallel
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There are 9 strands in S3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
2
3023 3032first strand
Strand 2
2
3164 3172anti-parallel
Strand 3
2
3072 3078anti-parallel
Strand 4
2
3121 3127anti-parallel
Strand 5
2
3111 3115anti-parallel
Strand 6
2
3087 3093anti-parallel
Strand 7
2
3147 3153anti-parallel
Strand 8
2
3039 3045anti-parallel
Strand 9
2
3023 3032anti-parallel
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There are 9 strands in S21 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
2
2011 2020first strand
Strand 2
2
2160 2173anti-parallel
Strand 3
2
2060 2071anti-parallel
Strand 4
2
2111 2117anti-parallel
Strand 5
2
2102 2104anti-parallel
Strand 6
2
2077 2085anti-parallel
Strand 7
2
2144 2152anti-parallel
Strand 8
2
2023 2031anti-parallel
Strand 9
2
2011 2020anti-parallel
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There are 2 strands in S22 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
2
2039 2041first strand
Strand 2
2
2044 2046anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il