Analysis of interatomic Contacts of Structural Units in PDB entry:
1BN8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BN8 entry

There is 1 chain in PDB entry 1BN8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ASN 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1BN8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 5Right-handed 310
Helix 2
2
A
14 16Right-handed 310
Helix 3
3
A
29 31Right-handed 310
Helix 4
4
A
38 45Right-handed alpha
Helix 5
5
A
75 78Right-handed alpha
Helix 6
6
A
85 91Right-handed alpha
Helix 7
7
A
94 97Right-handed alpha
Helix 8
8
A
105 121Right-handed alpha
Helix 9
9
A
208 210Right-handed 310
Helix 10
10
A
258 260Right-handed 310
Helix 11
11
A
332 335Right-handed 310
Helix 12
12
A
359 363Right-handed alpha
Helix 13
13
A
382 392Right-handed alpha
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There are 6 sheets in PDB entry 1BN8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
54 58parallel
Strand 3
A
129 133parallel
Strand 4
A
152 155parallel
Strand 5
A
194 197parallel
Strand 6
A
235 238parallel
Strand 7
A
266 269parallel
Strand 8
A
287 291parallel
Strand 9
A
317 321parallel
Strand 10
A
346 348parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
139 141parallel
Strand 3
A
158 160parallel
Strand 4
A
200 202parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 125first strand
Strand 2
A
144 147parallel
Strand 3
A
186 189parallel
Strand 4
A
226 229parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 170first strand
Strand 2
A
178 180anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 243first strand
Strand 2
A
272 274parallel
Strand 3
A
294 297parallel
Strand 4
A
324 327parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 312first strand
Strand 2
A
336 338parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il