Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 1BOO entry
There is 1 chain in PDB entry 1BOO
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
ASN 16 | ILE 335 |
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There are 5
helices in PDB entry 1BOO. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
HC | A
| 34 |
41 | Right-handed alpha |
Helix 2 |
HZ | A
| 253 |
262 | Right-handed alpha |
Helix 3 |
HA | A
| 278 |
285 | Right-handed alpha |
Helix 4 |
HB | A
| 297 |
304 | Right-handed alpha |
Helix 5 |
HB1 | A
| 314 |
325 | Right-handed alpha |
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There are
12 sheets in PDB entry 1BOO. Click on sheet of
interest to get list of strands forming it:
S31,
S3,
S4,
S5,
S6,
S7,
S8,
S1,
S2,
S32,
S51,
S52,
There are 1
strands in S31 sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 23 |
25 | first strand |
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There are 1
strands in S3 sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 28 |
31 | first strand |
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There are 1
strands in S4 sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 48 |
52 | first strand |
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There are 1
strands in S5 sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 91 |
97 | first strand |
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There are 1
strands in S6 sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 128 |
134 | first strand |
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There are 1
strands in S7 sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 157 |
164 | first strand |
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There are 1
strands in S8 sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 222 |
225 | first strand |
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There are 1
strands in S1 sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 268 |
271 | first strand |
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There are 1
strands in S2 sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 289 |
294 | first strand |
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There are 1
strands in S32 sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 329 |
332 | first strand |
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There are 1
strands in S51 sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 101 |
102 | first strand |
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There are 1
strands in S52 sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 105 |
107 | first strand |
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Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il