Analysis of interatomic Contacts of Structural Units in PDB entry:
1BOO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BOO entry

There is 1 chain in PDB entry 1BOO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASN 16ILE 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 1BOO. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
HC
A
34 41Right-handed alpha
Helix 2
HZ
A
253 262Right-handed alpha
Helix 3
HA
A
278 285Right-handed alpha
Helix 4
HB
A
297 304Right-handed alpha
Helix 5
HB1
A
314 325Right-handed alpha
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There are 12 sheets in PDB entry 1BOO. Click on sheet of interest to get list of strands forming it: S31, S3, S4, S5, S6, S7, S8, S1, S2, S32, S51, S52,

There are 1 strands in S31 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
23 25first strand
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There are 1 strands in S3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
28 31first strand
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There are 1 strands in S4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
48 52first strand
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There are 1 strands in S5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
91 97first strand
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There are 1 strands in S6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
128 134first strand
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There are 1 strands in S7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
157 164first strand
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There are 1 strands in S8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
222 225first strand
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There are 1 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
268 271first strand
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There are 1 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
289 294first strand
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There are 1 strands in S32 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
329 332first strand
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There are 1 strands in S51 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
101 102first strand
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There are 1 strands in S52 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
105 107first strand
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il