Analysis of interatomic Contacts of Structural Units in PDB entry:
1BPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BPD entry

There is 1 chain in PDB entry 1BPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 9GLU 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1BPD. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
12 30Right-handed alpha
Helix 2
2
A
32 49Right-handed alpha
Helix 3
3
A
55 62Right-handed alpha
Helix 4
4
A
66 79Right-handed alpha
Helix 5
5
A
82 91Right-handed alpha
Helix 6
6
A
92 103Right-handed alpha
Helix 7
7
A
107 116Right-handed alpha
Helix 8
8
A
121 126Right-handed alpha
Helix 9
9
A
128 132Right-handed 310
Helix 10
10
A
133 143Right-handed alpha
Helix 11
11
A
142 147Right-handed alpha
Helix 12
12
A
151 170Right-handed alpha
Helix 13
13
A
208 221Right-handed alpha
Helix 14
14
A
264 274Right-handed alpha
Helix 15
15
A
275 289Right-handed alpha
Helix 16
16
A
315 323Right-handed alpha
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There are 2 sheets in PDB entry 1BPD. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
174 177first strand
Strand 2
A
191 196anti-parallel
Strand 3
A
252 259parallel
Strand 4
A
234 240anti-parallel
Strand 5
A
224 230anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
291 294first strand
Strand 2
A
297 300anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il