Analysis of interatomic Contacts of Structural Units in PDB entry:
1BVR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BVR entry

There are 6 chains in PDB entry 1BVR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LEU 269
B
 THR 2LEU 269
C
 THR 2LEU 269
D
 THR 2LEU 269
E
 THR 2LEU 269
F
 THR 2LEU 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 1BVR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 31Right-handed alpha
Helix 2
2
A
44 53Right-handed alpha
Helix 3
3
A
68 82Right-handed alpha
Helix 4
4
A
113 122Right-handed alpha
Helix 5
5
A
125 137Right-handed alpha
Helix 6
6
A
159 182Right-handed alpha
Helix 7
7
A
197 203Right-handed alpha
Helix 8
8
A
209 225Right-handed alpha
Helix 9
9
A
236 245Right-handed alpha
Helix 10
10
A
248 250Right-handed 310
Helix 11
11
B
21 31Right-handed alpha
Helix 12
12
B
44 53Right-handed alpha
Helix 13
13
B
68 82Right-handed alpha
Helix 14
14
B
113 122Right-handed alpha
Helix 15
15
B
125 137Right-handed alpha
Helix 16
16
B
159 182Right-handed alpha
Helix 17
17
B
197 203Right-handed alpha
Helix 18
18
B
209 225Right-handed alpha
Helix 19
19
B
236 245Right-handed alpha
Helix 20
20
B
248 250Right-handed 310
Helix 21
21
C
21 31Right-handed alpha
Helix 22
22
C
44 53Right-handed alpha
Helix 23
23
C
68 82Right-handed alpha
Helix 24
24
C
113 122Right-handed alpha
Helix 25
25
C
125 137Right-handed alpha
Helix 26
26
C
159 182Right-handed alpha
Helix 27
27
C
197 203Right-handed alpha
Helix 28
28
C
209 225Right-handed alpha
Helix 29
29
C
236 245Right-handed alpha
Helix 30
30
C
248 250Right-handed 310
Helix 31
31
D
21 31Right-handed alpha
Helix 32
32
D
46 53Right-handed alpha
Helix 33
33
D
68 82Right-handed alpha
Helix 34
34
D
113 122Right-handed alpha
Helix 35
35
D
125 137Right-handed alpha
Helix 36
36
D
159 182Right-handed 310
Helix 37
37
D
213 215Right-handed 310
Helix 38
38
D
217 225Right-handed alpha
Helix 39
39
D
236 245Right-handed alpha
Helix 40
40
D
248 250Right-handed 310
Helix 41
41
E
21 31Right-handed alpha
Helix 42
42
E
44 53Right-handed alpha
Helix 43
43
E
68 72Right-handed alpha
Helix 44
44
E
78 81Right-handed alpha
Helix 45
45
E
113 120Right-handed alpha
Helix 46
46
E
125 127Right-handed 310
Helix 47
47
E
130 137Right-handed alpha
Helix 48
48
E
160 174Right-handed alpha
Helix 49
49
E
197 204Right-handed alpha
Helix 50
50
E
211 225Right-handed alpha
Helix 51
51
E
236 243Right-handed alpha
Helix 52
52
F
21 31Right-handed alpha
Helix 53
53
F
44 53Right-handed alpha
Helix 54
54
F
68 82Right-handed alpha
Helix 55
55
F
113 122Right-handed alpha
Helix 56
56
F
125 137Right-handed alpha
Helix 57
57
F
159 182Right-handed alpha
Helix 58
58
F
197 203Right-handed alpha
Helix 59
59
F
209 225Right-handed alpha
Helix 60
60
F
236 245Right-handed alpha
Helix 61
61
F
248 250Right-handed 310
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There are 7 sheets in PDB entry 1BVR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 260first strand
Strand 2
A
185 191parallel
Strand 3
A
143 148parallel
Strand 4
A
90 93parallel
Strand 5
A
9 12parallel
Strand 6
A
35 40parallel
Strand 7
A
59 62parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 260first strand
Strand 2
B
185 191parallel
Strand 3
B
143 148parallel
Strand 4
B
90 93parallel
Strand 5
B
9 12parallel
Strand 6
B
35 40parallel
Strand 7
B
60 62parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
256 260first strand
Strand 2
C
185 191parallel
Strand 3
C
143 148parallel
Strand 4
C
90 93parallel
Strand 5
C
9 12parallel
Strand 6
C
35 40parallel
Strand 7
C
60 62parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
256 260first strand
Strand 2
D
185 191parallel
Strand 3
D
143 148parallel
Strand 4
D
90 93parallel
Strand 5
D
9 12parallel
Strand 6
D
35 40parallel
Strand 7
D
59 62parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
143 146first strand
Strand 2
E
90 93parallel
Strand 3
E
9 13parallel
Strand 4
E
35 40parallel
Strand 5
E
60 62parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
187 190first strand
Strand 2
E
256 259parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
256 260first strand
Strand 2
F
185 191parallel
Strand 3
F
143 148parallel
Strand 4
F
90 93parallel
Strand 5
F
9 12parallel
Strand 6
F
35 40parallel
Strand 7
F
59 62parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il