Analysis of interatomic Contacts of Structural Units in PDB entry:
1BY7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BY7 entry

There is 1 chain in PDB entry 1BY7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2PRO 415
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1BY7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 22Right-handed alpha
Helix 2
2
A
32 45Right-handed alpha
Helix 3
3
A
48 57Right-handed alpha
Helix 4
4
A
100 114Right-handed alpha
Helix 5
5
A
139 149Right-handed alpha
Helix 6
6
A
158 177Right-handed alpha
Helix 7
7
A
280 285Right-handed alpha
Helix 8
8
A
288 294Right-handed alpha
Helix 9
9
A
321 326Right-handed alpha
Helix 10
10
A
331 333Right-handed 310
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There are 3 sheets in PDB entry 1BY7. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
405 412anti-parallel
Strand 3
A
394 400anti-parallel
Strand 4
A
262 269anti-parallel
Strand 5
A
251 258anti-parallel
Strand 6
A
234 246anti-parallel
Strand 7
A
300 310anti-parallel
Strand 8
A
386 390parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
122 132parallel
Strand 3
A
196 205anti-parallel
Strand 4
A
353 362parallel
Strand 5
A
312 319anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 225first strand
Strand 2
A
228 232anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il