Analysis of interatomic Contacts of Structural Units in PDB entry:
1C86


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1C86 entry

There is 1 chain in PDB entry 1C86 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 3ASP 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 1C86. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
4 12Right-handed alpha
Helix 2
2
A
16 26Right-handed alpha
Helix 3
3
A
33 36Right-handed alpha
Helix 4
4
A
38 43Right-handed 310
Helix 5
5
A
53 55Right-handed 310
Helix 6
6
A
92 102Right-handed alpha
Helix 7
7
A
188 200Right-handed alpha
Helix 8
8
A
220 238Right-handed alpha
Helix 9
9
A
241 243Right-handed 310
Helix 10
10
A
246 255Right-handed alpha
Helix 11
11
A
264 281Right-handed alpha
Helix 12
12
A
285 295Right-handed 310
Back to top of page

There is 1 sheet ( A) in PDB entry 1C86.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
69 74first strand
Strand 2
A
79 84anti-parallel
Strand 3
A
211 214parallel
Strand 4
A
106 109parallel
Strand 5
A
167 176parallel
Strand 6
A
153 162anti-parallel
Strand 7
A
140 149anti-parallel
Strand 8
A
133 135anti-parallel
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il