Analysis of interatomic Contacts of Structural Units in PDB entry:
1C88


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1C88 entry

There is 1 chain in PDB entry 1C88 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 2ASP 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1C88. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
2 14Right-handed alpha
Helix 2
2
A
15 27Right-handed alpha
Helix 3
3
A
32 37Right-handed alpha
Helix 4
4
A
38 44Right-handed 310
Helix 5
5
A
52 54Right-handed 310
Helix 6
6
A
91 103Right-handed alpha
Helix 7
7
A
187 201Right-handed alpha
Helix 8
8
A
219 239Right-handed alpha
Helix 9
9
A
240 244Right-handed 310
Helix 10
10
A
245 255Right-handed alpha
Helix 11
11
A
263 282Right-handed alpha
Helix 12
12
A
285 295Right-handed alpha
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There are 2 sheets in PDB entry 1C88. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
56 58first strand
Strand 2
A
66 74anti-parallel
Strand 3
A
79 84anti-parallel
Strand 4
A
211 214parallel
Strand 5
A
106 109parallel
Strand 6
A
168 176parallel
Strand 7
A
153 162anti-parallel
Strand 8
A
140 148anti-parallel
Strand 9
A
133 135anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
114 115first strand
Strand 2
A
118 119anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il