Analysis of interatomic Contacts of Structural Units in PDB entry:
1C8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1C8M entry

There are 4 chains in PDB entry 1C8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 ASN 1VAL 285
2
 SER 10GLN 261
3
 GLY 1GLN 238
4
 GLY 1ASP 44
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1C8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1Y
1
1 12Right-handed alpha
Helix 2
1Z
1
66 72Right-handed alpha
Helix 3
1AO
1
98 101Right-handed alpha
Helix 4
1A
1
104 110Right-handed alpha
Helix 5
1B
1
158 162Right-handed alpha
Helix 6
2Z
2
56 59Right-handed alpha
Helix 7
2A
2
90 98Right-handed alpha
Helix 8
2B
2
179 184Right-handed alpha
Helix 9
3Z
3
44 47Right-handed alpha
Helix 10
3A
3
98 103Right-handed alpha
Helix 11
3B
3
143 148Right-handed alpha
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There are 9 sheets in PDB entry 1C8M. Click on sheet of interest to get list of strands forming it: B11, B12, B21, B22, B23, B31, B32, B33, B41,

There are 4 strands in B11 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
75 83first strand
Strand 2
1
230 248anti-parallel
Strand 3
1
112 130anti-parallel
Strand 4
1
177 192anti-parallel
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There are 4 strands in B12 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
93 97first strand
Strand 2
1
216 221anti-parallel
Strand 3
1
137 145anti-parallel
Strand 4
1
165 171anti-parallel
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There are 2 strands in B21 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
14 18first strand
Strand 2
2
21 25anti-parallel
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There are 4 strands in B22 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
69 71first strand
Strand 2
2
238 254anti-parallel
Strand 3
2
99 111anti-parallel
Strand 4
2
196 202anti-parallel
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There are 4 strands in B23 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
78 82first strand
Strand 2
2
219 230anti-parallel
Strand 3
2
119 128anti-parallel
Strand 4
2
187 191anti-parallel
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There are 1 strands in B31 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
2 6first strand
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There are 4 strands in B32 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
69 72first strand
Strand 2
3
207 224anti-parallel
Strand 3
3
106 119anti-parallel
Strand 4
3
162 167anti-parallel
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There are 4 strands in B33 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
78 87first strand
Strand 2
3
188 193anti-parallel
Strand 3
3
128 134anti-parallel
Strand 4
3
151 156anti-parallel
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There are 2 strands in B41 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
4
2 6first strand
Strand 2
4
23 30anti-parallel
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