Analysis of interatomic Contacts of Structural Units in PDB entry:
1C8V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1C8V entry

There are 2 chains in PDB entry 1C8V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2ARG 267
B
 THR 3ASP 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 1C8V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 14Right-handed alpha
Helix 2
2
A
29 43Right-handed alpha
Helix 3
3
A
61 74Right-handed alpha
Helix 4
4
A
77 92Right-handed alpha
Helix 5
5
A
102 108Right-handed alpha
Helix 6
6
A
110 122Right-handed alpha
Helix 7
7
A
132 135Right-handed 310
Helix 8
8
A
136 146Right-handed alpha
Helix 9
9
A
159 170Right-handed alpha
Helix 10
10
A
193 203Right-handed alpha
Helix 11
11
A
216 227Right-handed alpha
Helix 12
12
A
234 244Right-handed alpha
Helix 13
13
A
247 265Right-handed alpha
Helix 14
14
B
18 20Right-handed 310
Helix 15
15
B
21 38Right-handed alpha
Helix 16
16
B
38 52Right-handed alpha
Helix 17
17
B
79 81Right-handed 310
Helix 18
18
B
86 101Right-handed alpha
Helix 19
19
B
113 126Right-handed alpha
Helix 20
20
B
136 142Right-handed alpha
Helix 21
21
B
142 152Right-handed alpha
Helix 22
22
B
165 181Right-handed alpha
Helix 23
23
B
196 204Right-handed alpha
Helix 24
24
B
206 221Right-handed alpha
Helix 25
25
B
234 242Right-handed alpha
Helix 26
26
B
243 245Right-handed 310
Helix 27
27
B
262 265Right-handed 310
Helix 28
28
B
269 274Right-handed alpha
Helix 29
29
B
301 305Right-handed 310
Helix 30
30
B
310 319Right-handed alpha
Helix 31
31
B
329 344Right-handed alpha
Helix 32
32
B
351 365Right-handed alpha
Helix 33
33
B
380 382Right-handed 310
Helix 34
34
B
383 389Right-handed alpha
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There are 4 sheets in PDB entry 1C8V. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
A
125 128parallel
Strand 3
A
97 101parallel
Strand 4
A
48 51parallel
Strand 5
A
18 24parallel
Strand 6
A
230 233parallel
Strand 7
A
208 211parallel
Strand 8
A
174 177parallel
Strand 9
A
153 154parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 9first strand
Strand 2
B
12 16anti-parallel
Strand 3
B
281 286anti-parallel
Strand 4
B
275 279anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 61first strand
Strand 2
B
71 77anti-parallel
Strand 3
B
370 376parallel
Strand 4
B
226 230parallel
Strand 5
B
251 259parallel
Strand 6
B
323 328parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 159first strand
Strand 2
B
129 135parallel
Strand 3
B
105 109parallel
Strand 4
B
184 186parallel
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