Analysis of interatomic Contacts of Structural Units in PDB entry:
1CBO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CBO entry

There is 1 chain in PDB entry 1CBO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 9VAL 506
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1CBO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 31Right-handed alpha
Helix 2
2
A
63 65Right-handed 310
Helix 3
3
A
79 85Right-handed alpha
Helix 4
4
A
114 117Right-handed 310
Helix 5
5
A
128 134Right-handed alpha
Helix 6
6
A
140 145Right-handed alpha
Helix 7
7
A
147 155Right-handed alpha
Helix 8
8
A
162 167Right-handed alpha
Helix 9
9
A
169 184Right-handed 310
Helix 10
10
A
197 204Right-handed alpha
Helix 11
11
A
212 214Right-handed 310
Helix 12
12
A
232 239Right-handed alpha
Helix 13
13
A
290 303Right-handed alpha
Helix 14
14
A
403 424Right-handed 310
Helix 15
15
A
475 477Right-handed 310
Helix 16
16
A
487 497Right-handed alpha
Helix 17
17
A
501 504Right-handed alpha
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There are 5 sheets in PDB entry 1CBO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 472first strand
Strand 2
A
284 287parallel
Strand 3
A
13 16parallel
Strand 4
A
36 39parallel
Strand 5
A
242 245parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 100first strand
Strand 2
A
105 109anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
346 350anti-parallel
Strand 3
A
358 363anti-parallel
Strand 4
A
373 380anti-parallel
Strand 5
A
323 329anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 391first strand
Strand 2
A
396 400anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 255first strand
Strand 2
A
261 268anti-parallel
Strand 3
A
274 282anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il