Analysis of interatomic Contacts of Structural Units in PDB entry:
1CCW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CCW entry

There are 4 chains in PDB entry 1CCW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 137
B
 MET 1GLU 483
C
 MET 1GLU 137
D
 MET 1GLU 483
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 50 helices in PDB entry 1CCW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 30Right-handed alpha
Helix 2
2
A
42 54Right-handed alpha
Helix 3
3
A
66 72Right-handed alpha
Helix 4
4
A
73 81Right-handed alpha
Helix 5
5
A
100 111Right-handed alpha
Helix 6
6
A
122 135Right-handed alpha
Helix 7
7
B
9 21Right-handed alpha
Helix 8
8
B
22 30Right-handed 310
Helix 9
9
B
31 41Right-handed alpha
Helix 10
10
B
42 46Right-handed 310
Helix 11
11
B
47 59Right-handed alpha
Helix 12
12
B
71 85Right-handed alpha
Helix 13
13
B
98 102Right-handed 310
Helix 14
14
B
103 118Right-handed alpha
Helix 15
15
B
126 142Right-handed alpha
Helix 16
16
B
155 165Right-handed alpha
Helix 17
17
B
186 207Right-handed alpha
Helix 18
18
B
225 243Right-handed alpha
Helix 19
19
B
257 279Right-handed alpha
Helix 20
20
B
300 319Right-handed alpha
Helix 21
21
B
336 354Right-handed alpha
Helix 22
22
B
362 387Right-handed alpha
Helix 23
23
B
390 401Right-handed alpha
Helix 24
24
B
439 458Right-handed alpha
Helix 25
25
B
462 473Right-handed alpha
Helix 26
26
C
17 30Right-handed alpha
Helix 27
27
C
42 54Right-handed alpha
Helix 28
28
C
66 72Right-handed alpha
Helix 29
29
C
73 81Right-handed alpha
Helix 30
30
C
100 111Right-handed alpha
Helix 31
31
C
122 134Right-handed alpha
Helix 32
32
D
9 21Right-handed alpha
Helix 33
33
D
22 30Right-handed 310
Helix 34
34
D
31 41Right-handed alpha
Helix 35
35
D
42 46Right-handed 310
Helix 36
36
D
47 59Right-handed alpha
Helix 37
37
D
71 85Right-handed alpha
Helix 38
38
D
96 101Right-handed alpha
Helix 39
39
D
103 118Right-handed alpha
Helix 40
40
D
126 142Right-handed alpha
Helix 41
41
D
155 165Right-handed alpha
Helix 42
42
D
186 207Right-handed alpha
Helix 43
43
D
225 243Right-handed alpha
Helix 44
44
D
257 279Right-handed alpha
Helix 45
45
D
300 319Right-handed alpha
Helix 46
46
D
336 354Right-handed alpha
Helix 47
47
D
362 387Right-handed alpha
Helix 48
48
D
390 401Right-handed alpha
Helix 49
49
D
439 458Right-handed alpha
Helix 50
50
D
462 473Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 1CCW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 41first strand
Strand 2
A
5 11parallel
Strand 3
A
57 62parallel
Strand 4
A
87 92parallel
Strand 5
A
115 116parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
322 324parallel
Strand 3
B
285 291parallel
Strand 4
B
247 253parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 94first strand
Strand 2
B
146 149parallel
Strand 3
B
169 171parallel
Strand 4
B
212 214parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
419 422first strand
Strand 2
B
428 432anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 41first strand
Strand 2
C
5 11parallel
Strand 3
C
57 62parallel
Strand 4
C
87 92parallel
Strand 5
C
115 116parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
62 64first strand
Strand 2
D
322 324parallel
Strand 3
D
285 291parallel
Strand 4
D
247 253parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
91 94first strand
Strand 2
D
146 149parallel
Strand 3
D
169 171parallel
Strand 4
D
212 214parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
419 422first strand
Strand 2
D
428 432anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il