Analysis of interatomic Contacts of Structural Units in PDB entry:
1CJY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CJY entry

There are 2 chains in PDB entry 1CJY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 13GLN 721
B
 GLN 1015GLU 1717
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 54 helices in PDB entry 1CJY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 40Right-handed alpha
Helix 2
2
A
151 174Right-handed alpha
Helix 3
4
A
179 182Right-handed 310
Helix 4
5
A
197 215Right-handed alpha
Helix 5
6
A
217 219Right-handed 310
Helix 6
7
A
227 240Right-handed alpha
Helix 7
9
A
262 267Right-handed 310
Helix 8
10
A
268 285Right-handed alpha
Helix 9
11
A
290 305Right-handed alpha
Helix 10
12
A
306 308Right-handed 310
Helix 11
13
A
312 319Right-handed 310
Helix 12
14
A
340 344Right-handed 310
Helix 13
15
A
364 368Right-handed 310
Helix 14
16
A
385 394Right-handed alpha
Helix 15
17
A
395 400Right-handed alpha
Helix 16
18
A
400 405Right-handed alpha
Helix 17
19
A
416 424Right-handed alpha
Helix 18
20
A
425 430Right-handed alpha
Helix 19
21
A
462 477Right-handed alpha
Helix 20
22
A
549 553Right-handed 310
Helix 21
23
A
557 562Right-handed alpha
Helix 22
24
A
563 567Right-handed 310
Helix 23
25
A
587 600Right-handed alpha
Helix 24
26
A
610 616Right-handed alpha
Helix 25
27
A
645 648Right-handed 310
Helix 26
28
A
659 667Right-handed alpha
Helix 27
29
A
686 703Right-handed alpha
Helix 28
30
A
704 719Right-handed alpha
Helix 29
31
B
1033 1040Right-handed alpha
Helix 30
32
B
1110 1112Right-handed 310
Helix 31
33
B
1151 1174Right-handed alpha
Helix 32
35
B
1197 1216Right-handed alpha
Helix 33
36
B
1217 1221Right-handed 310
Helix 34
37
B
1227 1239Right-handed alpha
Helix 35
39
B
1262 1267Right-handed 310
Helix 36
40
B
1268 1285Right-handed alpha
Helix 37
41
B
1290 1305Right-handed alpha
Helix 38
42
B
1306 1308Right-handed 310
Helix 39
43
B
1312 1319Right-handed 310
Helix 40
44
B
1340 1344Right-handed 310
Helix 41
45
B
1357 1359Right-handed 310
Helix 42
46
B
1364 1368Right-handed 310
Helix 43
47
B
1385 1394Right-handed alpha
Helix 44
48
B
1395 1400Right-handed alpha
Helix 45
49
B
1400 1405Right-handed alpha
Helix 46
51
B
1463 1476Right-handed alpha
Helix 47
52
B
1549 1553Right-handed 310
Helix 48
53
B
1557 1563Right-handed alpha
Helix 49
54
B
1564 1567Right-handed 310
Helix 50
55
B
1587 1600Right-handed alpha
Helix 51
56
B
1610 1616Right-handed alpha
Helix 52
57
B
1644 1650Right-handed 310
Helix 53
59
B
1686 1703Right-handed alpha
Helix 54
60
B
1704 1716Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 1CJY. Click on sheet of interest to get list of strands forming it: A, A1, B, C, C1, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 79first strand
Strand 2
A
18 28anti-parallel
Strand 3
A
70 79anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in A1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 79first strand
Strand 2
A
18 28anti-parallel
Strand 3
A
128 134anti-parallel
Strand 4
A
120 124anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
44 50anti-parallel
Strand 3
A
87 93anti-parallel
Strand 4
A
100 105anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 623first strand
Strand 2
A
636 641anti-parallel
Strand 3
A
570 575parallel
Strand 4
A
190 194parallel
Strand 5
A
221 226parallel
Strand 6
A
326 333parallel
Strand 7
A
345 349anti-parallel
Strand 8
A
354 355anti-parallel
Strand 9
A
362 363anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in C1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 623first strand
Strand 2
A
636 641anti-parallel
Strand 3
A
570 575parallel
Strand 4
A
190 194parallel
Strand 5
A
221 226parallel
Strand 6
A
326 333parallel
Strand 7
A
544 548anti-parallel
Strand 8
A
488 490anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 373first strand
Strand 2
A
376 377anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
650 652first strand
Strand 2
A
655 656anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1070 1079first strand
Strand 2
B
1017 1028anti-parallel
Strand 3
B
1128 1139anti-parallel
Strand 4
B
1117 1124anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1058 1059first strand
Strand 2
B
1044 1049anti-parallel
Strand 3
B
1086 1093anti-parallel
Strand 4
B
1100 1108anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1145 1146first strand
Strand 2
B
1361 1363anti-parallel
Strand 3
B
1354 1356anti-parallel
Strand 4
B
1345 1349anti-parallel
Strand 5
B
1326 1333anti-parallel
Strand 6
B
1221 1226parallel
Strand 7
B
1190 1194parallel
Strand 8
B
1571 1573parallel
Strand 9
B
1638 1639parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1371 1373first strand
Strand 2
B
1376 1379anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1650 1652first strand
Strand 2
B
1655 1656anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il