Analysis of interatomic Contacts of Structural Units in PDB entry:
1CLC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CLC entry

There is 1 chain in PDB entry 1CLC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 35ASN 575
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1CLC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
140 153Right-handed alpha
Helix 2
2
A
206 222Right-handed alpha
Helix 3
3
A
224 227Right-handed alpha
Helix 4
4
A
235 238Right-handed 310
Helix 5
5
A
243 258Right-handed alpha
Helix 6
6
A
282 284Right-handed 310
Helix 7
7
A
296 313Right-handed alpha
Helix 8
8
A
318 337Right-handed alpha
Helix 9
9
A
360 374Right-handed alpha
Helix 10
10
A
377 389Right-handed alpha
Helix 11
11
A
404 413Right-handed alpha
Helix 12
12
A
421 443Right-handed alpha
Helix 13
13
A
459 476Right-handed alpha
Helix 14
14
A
480 494Right-handed alpha
Helix 15
15
A
518 522Right-handed alpha
Helix 16
16
A
558 571Right-handed alpha
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There are 4 sheets in PDB entry 1CLC. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 71first strand
Strand 2
A
103 109anti-parallel
Strand 3
A
94 98anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
117 122anti-parallel
Strand 3
A
77 82anti-parallel
Strand 4
A
87 92anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 163first strand
Strand 2
A
166 170anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 272first strand
Strand 2
A
290 292anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il