Analysis of interatomic Contacts of Structural Units in PDB entry:
1CLI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CLI entry

There are 4 chains in PDB entry 1CLI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5GLU 345
B
 ALA 1021GLU 1345
C
 THR 2005GLU 2345
D
 ALA 3021GLU 3345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 1CLI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 25Right-handed alpha
Helix 2
2
A
27 33Right-handed alpha
Helix 3
3
A
69 76Right-handed 310
Helix 4
4
A
83 98Right-handed alpha
Helix 5
5
A
116 133Right-handed alpha
Helix 6
6
A
166 168Right-handed 310
Helix 7
7
A
194 203Right-handed alpha
Helix 8
8
A
218 223Right-handed alpha
Helix 9
9
A
230 239Right-handed alpha
Helix 10
10
A
252 259Right-handed alpha
Helix 11
11
A
271 273Right-handed 310
Helix 12
12
A
278 287Right-handed alpha
Helix 13
13
A
291 297Right-handed alpha
Helix 14
14
A
310 323Right-handed 310
Helix 15
15
B
1022 1033Right-handed alpha
Helix 16
16
B
1070 1076Right-handed alpha
Helix 17
17
B
1083 1098Right-handed alpha
Helix 18
18
B
1116 1133Right-handed alpha
Helix 19
19
B
1194 1204Right-handed alpha
Helix 20
20
B
1218 1223Right-handed alpha
Helix 21
21
B
1230 1239Right-handed alpha
Helix 22
22
B
1252 1256Right-handed alpha
Helix 23
23
B
1258 1260Right-handed 310
Helix 24
24
B
1271 1273Right-handed 310
Helix 25
25
B
1278 1287Right-handed alpha
Helix 26
26
B
1291 1297Right-handed alpha
Helix 27
27
B
1310 1321Right-handed 310
Helix 28
28
C
2016 2031Right-handed 310
Helix 29
29
C
2070 2076Right-handed alpha
Helix 30
30
C
2083 2098Right-handed alpha
Helix 31
31
C
2116 2133Right-handed alpha
Helix 32
32
C
2194 2203Right-handed alpha
Helix 33
33
C
2218 2223Right-handed alpha
Helix 34
34
C
2230 2239Right-handed alpha
Helix 35
35
C
2252 2256Right-handed alpha
Helix 36
36
C
2271 2273Right-handed 310
Helix 37
37
C
2278 2287Right-handed alpha
Helix 38
38
C
2291 2294Right-handed alpha
Helix 39
39
C
2310 2323Right-handed 310
Helix 40
40
D
3027 3033Right-handed alpha
Helix 41
41
D
3070 3076Right-handed alpha
Helix 42
42
D
3083 3098Right-handed alpha
Helix 43
43
D
3116 3133Right-handed alpha
Helix 44
44
D
3166 3168Right-handed 310
Helix 45
45
D
3194 3204Right-handed alpha
Helix 46
46
D
3218 3222Right-handed alpha
Helix 47
47
D
3230 3239Right-handed alpha
Helix 48
48
D
3252 3256Right-handed alpha
Helix 49
49
D
3258 3260Right-handed 310
Helix 50
50
D
3278 3286Right-handed alpha
Helix 51
51
D
3291 3297Right-handed alpha
Helix 52
52
D
3310 3322Right-handed 310
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There are 9 sheets in PDB entry 1CLI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
B
1058 1066anti-parallel
Strand 3
B
1154 1165anti-parallel
Strand 4
B
1101 1111anti-parallel
Strand 5
B
1136 1144parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1047 1050first strand
Strand 2
A
58 66first strand
Strand 3
A
154 165anti-parallel
Strand 4
A
101 111anti-parallel
Strand 5
A
136 144parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 343first strand
Strand 2
A
265 269parallel
Strand 3
A
327 335anti-parallel
Strand 4
A
180 185anti-parallel
Strand 5
A
302 308anti-parallel
Strand 6
A
242 247anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1342 1344first strand
Strand 2
B
1265 1269parallel
Strand 3
B
1327 1335anti-parallel
Strand 4
B
1180 1185anti-parallel
Strand 5
B
1302 1308anti-parallel
Strand 6
B
1242 1247anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2047 2050first strand
Strand 2
D
3058 3066anti-parallel
Strand 3
D
3154 3165anti-parallel
Strand 4
D
3101 3111anti-parallel
Strand 5
D
3142 3144parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3047 3050first strand
Strand 2
C
2058 2066anti-parallel
Strand 3
C
2154 2165anti-parallel
Strand 4
C
2101 2111anti-parallel
Strand 5
C
2136 2144parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2341 2343first strand
Strand 2
C
2266 2269parallel
Strand 3
C
2327 2334anti-parallel
Strand 4
C
2180 2185anti-parallel
Strand 5
C
2302 2308anti-parallel
Strand 6
C
2242 2247anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3342 3344first strand
Strand 2
D
3265 3269parallel
Strand 3
D
3327 3335anti-parallel
Strand 4
D
3180 3185anti-parallel
Strand 5
D
3302 3308anti-parallel
Strand 6
D
3242 3247anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3104 3106first strand
Strand 2
D
3136 3139parallel
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