Analysis of interatomic Contacts of Structural Units in PDB entry:
1CYY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CYY entry

There are 2 chains in PDB entry 1CYY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 218LYS 472
B
 PHE 214PRO 474
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1CYY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
250 264Right-handed alpha
Helix 2
2
A
285 298Right-handed alpha
Helix 3
3
A
300 314Right-handed alpha
Helix 4
4
A
328 343Right-handed alpha
Helix 5
5
A
344 348Right-handed 310
Helix 6
6
A
376 380Right-handed 310
Helix 7
7
A
384 402Right-handed alpha
Helix 8
8
A
432 437Right-handed 310
Helix 9
9
B
250 263Right-handed alpha
Helix 10
10
B
285 298Right-handed alpha
Helix 11
11
B
300 314Right-handed alpha
Helix 12
12
B
328 343Right-handed alpha
Helix 13
13
B
344 348Right-handed 310
Helix 14
14
B
376 380Right-handed 310
Helix 15
15
B
384 401Right-handed alpha
Helix 16
16
B
432 437Right-handed 310
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There are 2 sheets in PDB entry 1CYY. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 245first strand
Strand 2
A
233 241anti-parallel
Strand 3
A
218 227anti-parallel
Strand 4
A
458 470anti-parallel
Strand 5
A
266 278anti-parallel
Strand 6
A
406 417anti-parallel
Strand 7
A
420 431anti-parallel
Strand 8
A
233 241anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 245first strand
Strand 2
B
233 241anti-parallel
Strand 3
B
218 227anti-parallel
Strand 4
B
458 470anti-parallel
Strand 5
B
266 278anti-parallel
Strand 6
B
406 417anti-parallel
Strand 7
B
420 431anti-parallel
Strand 8
B
233 241anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il