Analysis of interatomic Contacts of Structural Units in PDB entry:
1D02


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D02 entry

There are 4 chains in PDB entry 1D02 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
G 1 C 10
D
G 1 C 10
A
LEU 6ASP 202
B
LYS 3ASP 202
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 1D02. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
11 21Right-handed alpha
Helix 2
2
A
26 35Right-handed alpha
Helix 3
3
A
59 66Right-handed alpha
Helix 4
4
A
72 76Right-handed 310
Helix 5
5
A
110 115Right-handed 310
Helix 6
6
A
117 126Right-handed 310
Helix 7
7
A
127 139Right-handed alpha
Helix 8
8
A
155 158Right-handed 310
Helix 9
9
A
159 171Right-handed alpha
Helix 10
10
A
185 197Right-handed alpha
Helix 11
11
A
198 202Right-handed 310
Helix 12
12
B
5 9Right-handed 310
Helix 13
13
B
11 21Right-handed alpha
Helix 14
14
B
26 35Right-handed alpha
Helix 15
15
B
59 64Right-handed alpha
Helix 16
16
B
72 76Right-handed 310
Helix 17
17
B
110 115Right-handed 310
Helix 18
18
B
117 126Right-handed 310
Helix 19
19
B
127 139Right-handed alpha
Helix 20
20
B
155 158Right-handed 310
Helix 21
21
B
159 171Right-handed alpha
Helix 22
22
B
173 175Right-handed 310
Helix 23
23
B
185 197Right-handed alpha
Helix 24
24
B
198 202Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 1D02. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
40 44first strand
Strand 2
A
84 88anti-parallel
Strand 3
A
94 101anti-parallel
Strand 4
A
148 153parallel
Strand 5
A
177 180parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
40 44first strand
Strand 2
B
84 88anti-parallel
Strand 3
B
93 101anti-parallel
Strand 4
B
148 153parallel
Strand 5
B
177 180parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il