Analysis of interatomic Contacts of Structural Units in PDB entry:
1D1T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1D1T entry

There are 4 chains in PDB entry 1D1T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	PHE 374
B	GLY 1	PHE 374
C	GLY 1	PHE 374
D	GLY 1	PHE 374

There are 63 helices in PDB entry 1D1T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	46	55	Right-handed alpha
Helix 2	2	A	100	105	Right-handed alpha
Helix 3	3	A	165	170	Right-handed alpha
Helix 4	4	A	171	173	Right-handed 310
Helix 5	5	A	174	185	Right-handed alpha
Helix 6	6	A	201	214	Right-handed alpha
Helix 7	7	A	225	227	Right-handed 310
Helix 8	8	A	228	236	Right-handed alpha
Helix 9	9	A	242	246	Right-handed 310
Helix 10	10	A	249	259	Right-handed alpha
Helix 11	11	A	271	280	Right-handed alpha
Helix 12	12	A	305	310	Right-handed alpha
Helix 13	13	A	318	322	Right-handed 310
Helix 14	14	A	323	336	Right-handed alpha
Helix 15	15	A	342	344	Right-handed 310
Helix 16	16	A	354	364	Right-handed alpha
Helix 17	17	B	46	55	Right-handed alpha
Helix 18	18	B	100	105	Right-handed alpha
Helix 19	19	B	165	170	Right-handed alpha
Helix 20	20	B	171	173	Right-handed 310
Helix 21	21	B	174	185	Right-handed alpha
Helix 22	22	B	201	215	Right-handed alpha
Helix 23	23	B	225	227	Right-handed 310
Helix 24	24	B	228	236	Right-handed alpha
Helix 25	25	B	242	246	Right-handed 310
Helix 26	26	B	249	259	Right-handed alpha
Helix 27	27	B	271	282	Right-handed alpha
Helix 28	28	B	304	310	Right-handed alpha
Helix 29	29	B	318	322	Right-handed 310
Helix 30	30	B	323	337	Right-handed alpha
Helix 31	31	B	354	364	Right-handed alpha
Helix 32	32	C	46	55	Right-handed alpha
Helix 33	33	C	100	105	Right-handed alpha
Helix 34	34	C	165	170	Right-handed alpha
Helix 35	35	C	171	173	Right-handed 310
Helix 36	36	C	174	185	Right-handed alpha
Helix 37	37	C	203	213	Right-handed alpha
Helix 38	38	C	225	227	Right-handed 310
Helix 39	39	C	228	236	Right-handed alpha
Helix 40	40	C	242	246	Right-handed 310
Helix 41	41	C	249	258	Right-handed alpha
Helix 42	42	C	272	282	Right-handed alpha
Helix 43	43	C	305	310	Right-handed alpha
Helix 44	44	C	318	322	Right-handed 310
Helix 45	45	C	323	337	Right-handed alpha
Helix 46	46	C	354	362	Right-handed alpha
Helix 47	47	C	363	365	Right-handed 310
Helix 48	48	D	46	55	Right-handed alpha
Helix 49	49	D	100	105	Right-handed alpha
Helix 50	50	D	165	170	Right-handed alpha
Helix 51	51	D	171	173	Right-handed 310
Helix 52	52	D	174	185	Right-handed alpha
Helix 53	53	D	201	214	Right-handed alpha
Helix 54	54	D	225	227	Right-handed 310
Helix 55	55	D	228	235	Right-handed alpha
Helix 56	56	D	242	246	Right-handed 310
Helix 57	57	D	249	259	Right-handed alpha
Helix 58	58	D	271	282	Right-handed alpha
Helix 59	59	D	305	310	Right-handed alpha
Helix 60	60	D	318	322	Right-handed 310
Helix 61	61	D	323	337	Right-handed alpha
Helix 62	62	D	342	344	Right-handed 310
Helix 63	63	D	354	364	Right-handed alpha

There are 16 sheets in PDB entry 1D1T. Click on sheet of interest to get list of strands forming it: A, B, B1, C, D, E, F, F1, G, H, H1, I, J, K, L, L1,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	13	first strand
Strand 2	A	22	28	anti-parallel
Strand 3	A	130	131	anti-parallel
Strand 4	A	136	137	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	159	first strand
Strand 2	A	88	91	anti-parallel
Strand 3	A	68	76	anti-parallel
Strand 4	A	35	44	anti-parallel
Strand 5	A	149	153	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in B1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	159	first strand
Strand 2	A	88	91	anti-parallel
Strand 3	A	68	76	anti-parallel
Strand 4	A	35	44	anti-parallel
Strand 5	A	369	373	anti-parallel
Strand 6	A	346	351	parallel

Back to list of sheets
Back to top of page

There are 12 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	241	first strand
Strand 2	A	218	222	parallel
Strand 3	A	194	198	parallel
Strand 4	A	264	267	parallel
Strand 5	A	288	291	parallel
Strand 6	A	313	316	parallel
Strand 7	B	313	315	anti-parallel
Strand 8	B	288	291	parallel
Strand 9	B	264	267	parallel
Strand 10	B	194	198	parallel
Strand 11	B	218	222	parallel
Strand 12	B	239	241	parallel

Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	303	first strand
Strand 2	B	301	303	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	13	first strand
Strand 2	B	22	28	anti-parallel
Strand 3	B	130	132	anti-parallel
Strand 4	B	135	137	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	159	first strand
Strand 2	B	88	91	anti-parallel
Strand 3	B	69	76	anti-parallel
Strand 4	B	35	44	anti-parallel
Strand 5	B	149	153	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in F1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	159	first strand
Strand 2	B	88	91	anti-parallel
Strand 3	B	69	76	anti-parallel
Strand 4	B	35	44	anti-parallel
Strand 5	B	369	373	anti-parallel
Strand 6	B	346	351	parallel

Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	13	first strand
Strand 2	C	22	28	anti-parallel
Strand 3	C	130	131	anti-parallel
Strand 4	C	136	137	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	159	first strand
Strand 2	C	88	91	anti-parallel
Strand 3	C	69	76	anti-parallel
Strand 4	C	35	44	anti-parallel
Strand 5	C	149	153	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in H1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	159	first strand
Strand 2	C	88	91	anti-parallel
Strand 3	C	69	76	anti-parallel
Strand 4	C	35	44	anti-parallel
Strand 5	C	369	373	anti-parallel
Strand 6	C	346	351	parallel

Back to list of sheets
Back to top of page

There are 12 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	241	first strand
Strand 2	C	218	222	parallel
Strand 3	C	194	198	parallel
Strand 4	C	264	267	parallel
Strand 5	C	288	291	parallel
Strand 6	C	313	316	parallel
Strand 7	D	313	316	anti-parallel
Strand 8	D	288	291	parallel
Strand 9	D	264	267	parallel
Strand 10	D	194	198	parallel
Strand 11	D	218	222	parallel
Strand 12	D	239	241	parallel

Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	303	first strand
Strand 2	D	301	303	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	64	first strand
Strand 2	D	7	14	anti-parallel
Strand 3	D	22	28	anti-parallel
Strand 4	D	130	132	anti-parallel
Strand 5	D	135	137	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	159	first strand
Strand 2	D	88	91	anti-parallel
Strand 3	D	69	76	anti-parallel
Strand 4	D	35	44	anti-parallel
Strand 5	D	149	153	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in L1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	159	first strand
Strand 2	D	88	91	anti-parallel
Strand 3	D	69	76	anti-parallel
Strand 4	D	35	44	anti-parallel
Strand 5	D	369	373	anti-parallel
Strand 6	D	346	351	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1D1T

Analysis of interatomic Contacts of Structural Units in PDB entry:
1D1T