Analysis of interatomic Contacts of Structural Units in PDB entry:
1D2V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D2V entry

There are 6 chains in PDB entry 1D2V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
CYS 1ALA 104
C
VAL 113SER 149
C
PRO 151ALA 578
B
CYS 1ALA 104
D
VAL 113SER 149
D
PRO 151ALA 578
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 1D2V. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
60 69Right-handed alpha
Helix 2
2
A
72 76Right-handed 310
Helix 3
3
A
84 98Right-handed alpha
Helix 4
4
C
173 178Right-handed alpha
Helix 5
5
C
180 188Right-handed alpha
Helix 6
6
C
220 225Right-handed 310
Helix 7
7
C
243 268Right-handed alpha
Helix 8
8
C
272 295Right-handed alpha
Helix 9
9
C
296 302Right-handed alpha
Helix 10
10
C
301 310Right-handed alpha
Helix 11
11
C
325 332Right-handed alpha
Helix 12
12
C
333 339Right-handed 310
Helix 13
13
C
362 364Right-handed 310
Helix 14
14
C
367 374Right-handed alpha
Helix 15
15
C
376 387Right-handed alpha
Helix 16
16
C
399 404Right-handed alpha
Helix 17
17
C
407 411Right-handed 310
Helix 18
18
C
416 428Right-handed alpha
Helix 19
19
C
432 440Right-handed alpha
Helix 20
20
C
447 456Right-handed alpha
Helix 21
21
C
457 469Right-handed alpha
Helix 22
22
C
470 474Right-handed 310
Helix 23
23
C
475 483Right-handed alpha
Helix 24
24
C
492 509Right-handed alpha
Helix 25
25
C
521 529Right-handed alpha
Helix 26
26
C
532 541Right-handed alpha
Helix 27
27
C
565 567Right-handed 310
Helix 28
28
C
572 576Right-handed 310
Helix 29
29
B
60 69Right-handed alpha
Helix 30
30
B
72 76Right-handed 310
Helix 31
31
B
84 98Right-handed alpha
Helix 32
32
D
173 178Right-handed alpha
Helix 33
33
D
180 187Right-handed alpha
Helix 34
34
D
221 225Right-handed 310
Helix 35
35
D
243 268Right-handed alpha
Helix 36
36
D
272 295Right-handed alpha
Helix 37
37
D
295 302Right-handed alpha
Helix 38
38
D
302 310Right-handed alpha
Helix 39
39
D
327 332Right-handed alpha
Helix 40
40
D
333 339Right-handed 310
Helix 41
41
D
362 364Right-handed 310
Helix 42
42
D
367 374Right-handed alpha
Helix 43
43
D
377 387Right-handed alpha
Helix 44
44
D
399 404Right-handed alpha
Helix 45
45
D
407 411Right-handed 310
Helix 46
46
D
416 428Right-handed alpha
Helix 47
47
D
432 440Right-handed alpha
Helix 48
48
D
447 456Right-handed alpha
Helix 49
49
D
457 469Right-handed alpha
Helix 50
50
D
470 474Right-handed 310
Helix 51
51
D
475 483Right-handed alpha
Helix 52
52
D
492 509Right-handed alpha
Helix 53
53
D
521 529Right-handed alpha
Helix 54
54
D
532 541Right-handed alpha
Helix 55
55
D
565 567Right-handed 310
Helix 56
56
D
572 576Right-handed 310
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There are 11 sheets in PDB entry 1D2V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
27 28first strand
Strand 2
C
164 165anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
78 83first strand
Strand 2
C
388 390anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
128 129first strand
Strand 2
C
143 144anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
342 344first strand
Strand 2
C
358 360anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
545 547first strand
Strand 2
C
561 563anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
27 28first strand
Strand 2
D
164 165anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
78 83first strand
Strand 2
D
388 390anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
128 129first strand
Strand 2
D
143 144anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
204 205first strand
Strand 2
D
208 209anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
342 344first strand
Strand 2
D
358 360anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
545 547first strand
Strand 2
D
561 563anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il