Analysis of interatomic Contacts of Structural Units in PDB entry:
1D3G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D3G entry

There is 1 chain in PDB entry 1D3G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 30ARG 396
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1D3G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 41Right-handed alpha
Helix 2
2
A
41 50Right-handed alpha
Helix 3
3
A
51 65Right-handed alpha
Helix 4
4
A
76 80Right-handed 310
Helix 5
5
A
104 112Right-handed alpha
Helix 6
6
A
138 140Right-handed 310
Helix 7
7
A
153 163Right-handed alpha
Helix 8
8
A
164 174Right-handed alpha
Helix 9
9
A
190 203Right-handed alpha
Helix 10
10
A
204 206Right-handed 310
Helix 11
11
A
226 243Right-handed alpha
Helix 12
12
A
245 249Right-handed 310
Helix 13
13
A
261 276Right-handed alpha
Helix 14
14
A
309 324Right-handed alpha
Helix 15
15
A
338 349Right-handed alpha
Helix 16
16
A
356 363Right-handed alpha
Helix 17
17
A
365 381Right-handed alpha
Helix 18
18
A
385 390Right-handed alpha
Helix 19
19
A
391 396Right-handed 310
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There are 3 sheets in PDB entry 1D3G. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
86 88anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
115 121parallel
Strand 3
A
92 94parallel
Strand 4
A
352 355parallel
Strand 5
A
330 333parallel
Strand 6
A
279 282parallel
Strand 7
A
251 256parallel
Strand 8
A
208 212parallel
Strand 9
A
178 182parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 137first strand
Strand 2
A
142 145anti-parallel
Strand 3
A
303 306anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il