Analysis of interatomic Contacts of Structural Units in PDB entry:
1DBP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DBP entry

There is 1 chain in PDB entry 1DBP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1GLN 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1DBP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A
A
14 30Right-handed alpha
Helix 2
B
A
43 53Right-handed alpha
Helix 3
C'
A
67 71Right-handed alpha
Helix 4
C
A
72 80Right-handed alpha
Helix 5
D
A
105 120Right-handed alpha
Helix 6
E
A
136 152Right-handed alpha
Helix 7
F
A
166 179Right-handed alpha
Helix 8
G
A
191 204Right-handed alpha
Helix 9
H
A
218 225Right-handed alpha
Helix 10
I
A
237 252Right-handed alpha
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There are 2 sheets in PDB entry 1DBP. Click on sheet of interest to get list of strands forming it: S1, S2,

There are 6 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 38first strand
Strand 2
A
3 8parallel
Strand 3
A
60 63parallel
Strand 4
A
85 88parallel
Strand 5
A
99 103parallel
Strand 6
A
260 263parallel
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There are 6 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 161first strand
Strand 2
A
125 130parallel
Strand 3
A
184 188parallel
Strand 4
A
210 215parallel
Strand 5
A
231 235parallel
Strand 6
A
266 268anti-parallel
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