Analysis of interatomic Contacts of Structural Units in PDB entry:
1DJQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DJQ entry

There are 2 chains in PDB entry 1DJQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1VAL 729
B
 ALA 1VAL 729
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 1DJQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 11Right-handed 310
Helix 2
2
A
37 51Right-handed alpha
Helix 3
3
A
79 96Right-handed alpha
Helix 4
4
A
107 111Right-handed 310
Helix 5
5
A
140 162Right-handed alpha
Helix 6
6
A
174 181Right-handed alpha
Helix 7
7
A
194 214Right-handed alpha
Helix 8
8
A
238 248Right-handed alpha
Helix 9
9
A
263 267Right-handed 310
Helix 10
10
A
279 288Right-handed alpha
Helix 11
11
A
302 312Right-handed alpha
Helix 12
12
A
321 327Right-handed alpha
Helix 13
13
A
329 336Right-handed alpha
Helix 14
14
A
338 342Right-handed 310
Helix 15
15
A
349 358Right-handed alpha
Helix 16
16
A
372 377Right-handed alpha
Helix 17
17
A
398 411Right-handed alpha
Helix 18
18
A
427 432Right-handed alpha
Helix 19
19
A
437 440Right-handed 310
Helix 20
20
A
441 456Right-handed alpha
Helix 21
21
A
471 477Right-handed alpha
Helix 22
22
A
516 523Right-handed alpha
Helix 23
23
A
540 552Right-handed alpha
Helix 24
24
A
566 571Right-handed alpha
Helix 25
25
A
573 584Right-handed alpha
Helix 26
26
A
648 657Right-handed alpha
Helix 27
27
A
659 664Right-handed alpha
Helix 28
28
A
673 676Right-handed 310
Helix 29
29
A
680 694Right-handed alpha
Helix 30
30
B
3 11Right-handed 310
Helix 31
31
B
37 51Right-handed alpha
Helix 32
32
B
79 95Right-handed alpha
Helix 33
33
B
107 111Right-handed 310
Helix 34
34
B
140 161Right-handed alpha
Helix 35
35
B
174 181Right-handed alpha
Helix 36
36
B
194 214Right-handed alpha
Helix 37
37
B
238 248Right-handed alpha
Helix 38
38
B
263 267Right-handed 310
Helix 39
39
B
279 288Right-handed alpha
Helix 40
40
B
302 312Right-handed alpha
Helix 41
41
B
321 327Right-handed alpha
Helix 42
42
B
329 337Right-handed alpha
Helix 43
43
B
338 342Right-handed 310
Helix 44
44
B
349 358Right-handed alpha
Helix 45
45
B
372 377Right-handed alpha
Helix 46
46
B
398 411Right-handed alpha
Helix 47
47
B
427 432Right-handed alpha
Helix 48
48
B
437 440Right-handed 310
Helix 49
49
B
441 457Right-handed alpha
Helix 50
50
B
471 478Right-handed alpha
Helix 51
51
B
516 523Right-handed alpha
Helix 52
52
B
540 552Right-handed alpha
Helix 53
53
B
566 571Right-handed alpha
Helix 54
54
B
573 584Right-handed alpha
Helix 55
55
B
648 657Right-handed alpha
Helix 56
56
B
658 665Right-handed 310
Helix 57
57
B
673 676Right-handed 310
Helix 58
58
B
680 694Right-handed alpha
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There are 16 sheets in PDB entry 1DJQ. Click on sheet of interest to get list of strands forming it: A, B, B1, C, D, E, F, G, H, I, I1, J, K, L, M, N,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 15first strand
Strand 2
A
18 20anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
253 258parallel
Strand 3
A
218 226parallel
Strand 4
A
165 170parallel
Strand 5
A
99 105parallel
Strand 6
A
55 62parallel
Strand 7
A
24 26parallel
Strand 8
A
318 320parallel
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There are 7 strands in B1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
253 258parallel
Strand 3
A
218 226parallel
Strand 4
A
165 170parallel
Strand 5
A
99 105parallel
Strand 6
A
55 62parallel
Strand 7
A
75 76parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
A
137 138parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 464first strand
Strand 2
A
414 418parallel
Strand 3
A
391 395parallel
Strand 4
A
482 485parallel
Strand 5
A
668 671parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 491first strand
Strand 2
A
644 646anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
514 515first strand
Strand 2
A
637 641parallel
Strand 3
A
530 535parallel
Strand 4
A
555 560parallel
Strand 5
A
587 590parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
592 598first strand
Strand 2
A
601 606anti-parallel
Strand 3
A
631 634anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 15first strand
Strand 2
B
18 20anti-parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
294 296first strand
Strand 2
B
253 258parallel
Strand 3
B
218 226parallel
Strand 4
B
165 170parallel
Strand 5
B
99 105parallel
Strand 6
B
55 62parallel
Strand 7
B
24 26parallel
Strand 8
B
318 320parallel
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There are 7 strands in I1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
294 296first strand
Strand 2
B
253 258parallel
Strand 3
B
218 226parallel
Strand 4
B
165 170parallel
Strand 5
B
99 105parallel
Strand 6
B
55 62parallel
Strand 7
B
75 76parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 122first strand
Strand 2
B
137 138parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
462 464first strand
Strand 2
B
414 418parallel
Strand 3
B
391 395parallel
Strand 4
B
482 485parallel
Strand 5
B
668 671parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
489 491first strand
Strand 2
B
644 646anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
514 515first strand
Strand 2
B
637 641parallel
Strand 3
B
530 535parallel
Strand 4
B
555 560parallel
Strand 5
B
587 590parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
592 598first strand
Strand 2
B
601 606anti-parallel
Strand 3
B
631 634anti-parallel
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