Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 1DK8 entry
There is 1 chain in PDB entry 1DK8
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
GLY 111 | VAL 257 |
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There are 10
helices in PDB entry 1DK8. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
1 | A
| 117 |
125 | Right-handed alpha |
Helix 2 |
2 | A
| 125 |
130 | Right-handed alpha |
Helix 3 |
3 | A
| 132 |
145 | Right-handed alpha |
Helix 4 |
4 | A
| 148 |
164 | Right-handed alpha |
Helix 5 |
5 | A
| 170 |
186 | Right-handed alpha |
Helix 6 |
6 | A
| 191 |
197 | Right-handed alpha |
Helix 7 |
7 | A
| 198 |
212 | Right-handed alpha |
Helix 8 |
8 | A
| 219 |
233 | Right-handed alpha |
Helix 9 |
9 | A
| 233 |
239 | Right-handed alpha |
Helix 10 |
10 | A
| 241 |
246 | Right-handed alpha |
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There are no sheets in PDB entry
1DK8
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il