Analysis of interatomic Contacts of Structural Units in PDB entry:
1DKF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DKF entry

There are 2 chains in PDB entry 1DKF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 230ALA 462
B
PRO 182ASN 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 1DKF. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
230 235Right-handed alpha
Helix 2
2
A
236 247Right-handed alpha
Helix 3
3
A
268 283Right-handed alpha
Helix 4
4
A
283 290Right-handed alpha
Helix 5
5
A
298 322Right-handed alpha
Helix 6
6
A
339 345Right-handed alpha
Helix 7
7
A
347 358Right-handed alpha
Helix 8
8
A
358 365Right-handed alpha
Helix 9
9
A
368 381Right-handed alpha
Helix 10
10
A
390 413Right-handed alpha
Helix 11
11
A
418 425Right-handed alpha
Helix 12
12
A
425 439Right-handed alpha
Helix 13
13
A
446 450Right-handed 310
Helix 14
14
A
451 462Right-handed alpha
Helix 15
15
B
182 199Right-handed alpha
Helix 16
16
B
201 205Right-handed 310
Helix 17
17
B
221 246Right-handed alpha
Helix 18
18
B
253 275Right-handed alpha
Helix 19
19
B
294 301Right-handed alpha
Helix 20
20
B
302 304Right-handed 310
Helix 21
21
B
305 316Right-handed alpha
Helix 22
22
B
317 320Right-handed 310
Helix 23
23
B
322 335Right-handed alpha
Helix 24
24
B
344 367Right-handed alpha
Helix 25
25
B
372 379Right-handed alpha
Helix 26
26
B
379 402Right-handed alpha
Helix 27
27
B
409 416Right-handed alpha
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There are 2 sheets in PDB entry 1DKF. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
328 330first strand
Strand 2
A
336 338anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
277 278first strand
Strand 2
B
283 285anti-parallel
Strand 3
B
291 293anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il