Analysis of interatomic Contacts of Structural Units in PDB entry:
1DM0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DM0 entry

There are 12 chains in PDB entry 1DM0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1MET 287
L
 LYS 1MET 287
B
 THR 1ARG 69
C
 THR 1ARG 69
D
 THR 1ARG 69
E
 THR 1ARG 69
F
 THR 1ARG 69
G
 THR 1ARG 69
H
 THR 1ARG 69
I
 THR 1ARG 69
J
 THR 1ARG 69
K
 THR 1ARG 69
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 1DM0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 24Right-handed alpha
Helix 2
2
A
93 96Right-handed 310
Helix 3
3
A
113 122Right-handed alpha
Helix 4
4
A
131 144Right-handed alpha
Helix 5
5
A
151 166Right-handed alpha
Helix 6
6
A
165 171Right-handed alpha
Helix 7
7
A
171 180Right-handed alpha
Helix 8
8
A
181 183Right-handed 310
Helix 9
9
A
193 201Right-handed alpha
Helix 10
10
A
202 210Right-handed alpha
Helix 11
11
A
211 213Right-handed 310
Helix 12
12
A
228 236Right-handed alpha
Helix 13
13
A
279 286Right-handed alpha
Helix 14
14
L
9 25Right-handed alpha
Helix 15
15
L
93 96Right-handed 310
Helix 16
16
L
113 122Right-handed alpha
Helix 17
17
L
131 144Right-handed alpha
Helix 18
18
L
151 166Right-handed alpha
Helix 19
19
L
166 171Right-handed alpha
Helix 20
20
L
171 179Right-handed alpha
Helix 21
21
L
180 182Right-handed 310
Helix 22
22
L
193 202Right-handed alpha
Helix 23
23
L
202 210Right-handed alpha
Helix 24
24
L
211 213Right-handed 310
Helix 25
25
L
228 236Right-handed alpha
Helix 26
26
L
279 286Right-handed alpha
Helix 27
27
B
33 46Right-handed alpha
Helix 28
28
C
35 47Right-handed alpha
Helix 29
29
D
35 47Right-handed alpha
Helix 30
30
E
36 46Right-handed alpha
Helix 31
31
F
35 47Right-handed alpha
Helix 32
32
G
35 46Right-handed alpha
Helix 33
33
H
35 47Right-handed alpha
Helix 34
34
I
35 47Right-handed alpha
Helix 35
35
J
35 46Right-handed alpha
Helix 36
36
K
35 46Right-handed alpha
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There are 13 sheets in PDB entry 1DM0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
49 55parallel
Strand 3
A
68 72anti-parallel
Strand 4
A
77 82anti-parallel
Strand 5
A
88 91anti-parallel
Strand 6
A
104 107parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 33first strand
Strand 2
A
36 41anti-parallel
Strand 3
A
238 239parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 130first strand
Strand 2
A
190 191anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 226first strand
Strand 2
A
218 221anti-parallel
Strand 3
A
275 278parallel
Strand 4
A
269 271anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
2 5first strand
Strand 2
L
49 54parallel
Strand 3
L
67 72anti-parallel
Strand 4
L
77 83anti-parallel
Strand 5
L
88 91anti-parallel
Strand 6
L
104 107parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
26 32first strand
Strand 2
L
37 40anti-parallel
Strand 3
L
238 239parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
224 226first strand
Strand 2
L
219 221anti-parallel
Strand 3
L
276 278parallel
Strand 4
L
269 271anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
49 52anti-parallel
Strand 3
B
66 69anti-parallel
Strand 4
C
12 14anti-parallel
Strand 5
C
20 22anti-parallel
Strand 6
C
29 31anti-parallel
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There are 27 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 8first strand
Strand 2
C
49 53anti-parallel
Strand 3
C
65 69anti-parallel
Strand 4
D
3 14anti-parallel
Strand 5
D
20 24anti-parallel
Strand 6
D
27 31anti-parallel
Strand 7
D
20 24anti-parallel
Strand 8
D
3 14anti-parallel
Strand 9
D
49 53anti-parallel
Strand 10
D
65 69anti-parallel
Strand 11
E
3 14anti-parallel
Strand 12
E
20 24anti-parallel
Strand 13
E
27 31anti-parallel
Strand 14
E
20 24anti-parallel
Strand 15
E
3 14anti-parallel
Strand 16
E
49 53anti-parallel
Strand 17
E
65 68anti-parallel
Strand 18
F
3 14anti-parallel
Strand 19
F
20 24anti-parallel
Strand 20
F
27 30anti-parallel
Strand 21
F
20 24anti-parallel
Strand 22
F
3 14anti-parallel
Strand 23
F
49 53anti-parallel
Strand 24
F
65 69anti-parallel
Strand 25
B
9 14anti-parallel
Strand 26
B
20 24anti-parallel
Strand 27
B
30 31anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
3 8first strand
Strand 2
G
49 53anti-parallel
Strand 3
G
65 69anti-parallel
Strand 4
H
9 14anti-parallel
Strand 5
H
20 24anti-parallel
Strand 6
H
27 31anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
27 31first strand
Strand 2
G
20 24anti-parallel
Strand 3
G
11 14anti-parallel
Strand 4
K
65 69anti-parallel
Strand 5
K
49 53anti-parallel
Strand 6
K
3 7anti-parallel
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There are 10 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
4 7first strand
Strand 2
H
49 53anti-parallel
Strand 3
H
65 69anti-parallel
Strand 4
I
3 14anti-parallel
Strand 5
I
20 24anti-parallel
Strand 6
I
29 31anti-parallel
Strand 7
I
20 24anti-parallel
Strand 8
I
3 14anti-parallel
Strand 9
I
49 53anti-parallel
Strand 10
I
65 69anti-parallel
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There are 8 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
27 29first strand
Strand 2
J
20 24anti-parallel
Strand 3
J
3 14anti-parallel
Strand 4
J
49 53anti-parallel
Strand 5
J
65 69anti-parallel
Strand 6
K
9 14anti-parallel
Strand 7
K
20 24anti-parallel
Strand 8
K
27 31anti-parallel
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