Analysis of interatomic Contacts of Structural Units in PDB entry:
1DS5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DS5 entry

There are 8 chains in PDB entry 1DS5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 6SER 333
B
 MET 6SER 333
C
 MET 6SER 333
D
 MET 6SER 333
E
 TYR 188ALA 203
F
 ARG 186ALA 203
G
 TYR 188ALA 203
H
 TYR 188ALA 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 1DS5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 19Right-handed alpha
Helix 2
2
A
20 24Right-handed 310
Helix 3
3
A
25 29Right-handed 310
Helix 4
4
A
35 37Right-handed 310
Helix 5
5
A
74 89Right-handed alpha
Helix 6
6
A
120 128Right-handed alpha
Helix 7
7
A
129 150Right-handed alpha
Helix 8
8
A
158 160Right-handed 310
Helix 9
9
A
194 198Right-handed 310
Helix 10
10
A
199 204Right-handed alpha
Helix 11
11
A
211 228Right-handed alpha
Helix 12
12
A
237 250Right-handed alpha
Helix 13
13
A
250 261Right-handed alpha
Helix 14
14
A
268 274Right-handed alpha
Helix 15
15
A
280 285Right-handed 310
Helix 16
16
A
288 292Right-handed 310
Helix 17
17
A
294 303Right-handed alpha
Helix 18
18
A
308 312Right-handed 310
Helix 19
19
A
314 319Right-handed alpha
Helix 20
20
A
324 333Right-handed alpha
Helix 21
21
B
20 25Right-handed alpha
Helix 22
22
B
26 29Right-handed 310
Helix 23
23
B
35 37Right-handed 310
Helix 24
24
B
74 89Right-handed alpha
Helix 25
25
B
120 128Right-handed alpha
Helix 26
26
B
129 150Right-handed alpha
Helix 27
27
B
158 160Right-handed 310
Helix 28
28
B
166 169Right-handed 310
Helix 29
29
B
194 198Right-handed 310
Helix 30
30
B
199 204Right-handed alpha
Helix 31
31
B
211 228Right-handed alpha
Helix 32
32
B
237 250Right-handed alpha
Helix 33
33
B
250 261Right-handed alpha
Helix 34
34
B
268 274Right-handed alpha
Helix 35
35
B
280 285Right-handed 310
Helix 36
36
B
294 305Right-handed alpha
Helix 37
37
B
308 312Right-handed 310
Helix 38
38
B
314 319Right-handed alpha
Helix 39
39
B
324 333Right-handed alpha
Helix 40
40
C
14 19Right-handed alpha
Helix 41
41
C
20 24Right-handed 310
Helix 42
42
C
25 29Right-handed 310
Helix 43
43
C
35 37Right-handed 310
Helix 44
44
C
74 89Right-handed alpha
Helix 45
45
C
120 128Right-handed alpha
Helix 46
46
C
129 150Right-handed alpha
Helix 47
47
C
158 160Right-handed 310
Helix 48
48
C
166 169Right-handed 310
Helix 49
49
C
194 198Right-handed 310
Helix 50
50
C
199 204Right-handed alpha
Helix 51
51
C
211 228Right-handed alpha
Helix 52
52
C
237 250Right-handed alpha
Helix 53
53
C
250 261Right-handed alpha
Helix 54
54
C
268 274Right-handed alpha
Helix 55
55
C
280 285Right-handed 310
Helix 56
56
C
288 292Right-handed 310
Helix 57
57
C
294 305Right-handed alpha
Helix 58
58
C
308 312Right-handed 310
Helix 59
59
C
314 319Right-handed alpha
Helix 60
60
C
324 331Right-handed alpha
Helix 61
61
D
20 25Right-handed alpha
Helix 62
62
D
26 29Right-handed 310
Helix 63
63
D
35 37Right-handed 310
Helix 64
64
D
74 89Right-handed alpha
Helix 65
65
D
120 128Right-handed alpha
Helix 66
66
D
129 150Right-handed alpha
Helix 67
67
D
158 160Right-handed 310
Helix 68
68
D
194 198Right-handed 310
Helix 69
69
D
199 204Right-handed alpha
Helix 70
70
D
211 228Right-handed alpha
Helix 71
71
D
237 250Right-handed alpha
Helix 72
72
D
250 261Right-handed alpha
Helix 73
73
D
268 274Right-handed alpha
Helix 74
74
D
280 285Right-handed 310
Helix 75
75
D
294 305Right-handed alpha
Helix 76
76
D
308 312Right-handed 310
Helix 77
77
D
314 319Right-handed alpha
Helix 78
78
D
324 333Right-handed alpha
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There are 12 sheets in PDB entry 1DS5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 101first strand
Strand 2
A
110 114anti-parallel
Strand 3
A
64 70anti-parallel
Strand 4
A
51 58anti-parallel
Strand 5
A
39 46anti-parallel
Strand 6
F
195 197parallel
Strand 7
F
191 192anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 153first strand
Strand 2
A
180 181anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 165first strand
Strand 2
A
170 173anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 101first strand
Strand 2
B
110 114anti-parallel
Strand 3
B
64 70anti-parallel
Strand 4
B
51 58anti-parallel
Strand 5
B
39 46anti-parallel
Strand 6
E
195 197parallel
Strand 7
E
191 192anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 153first strand
Strand 2
B
180 181anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 165first strand
Strand 2
B
170 173anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
97 102first strand
Strand 2
C
109 114anti-parallel
Strand 3
C
64 70anti-parallel
Strand 4
C
51 58anti-parallel
Strand 5
C
39 46anti-parallel
Strand 6
G
195 197parallel
Strand 7
G
191 192anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
152 153first strand
Strand 2
C
180 181anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 165first strand
Strand 2
C
170 173anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
97 102first strand
Strand 2
D
109 114anti-parallel
Strand 3
D
64 70anti-parallel
Strand 4
D
51 58anti-parallel
Strand 5
D
39 46anti-parallel
Strand 6
H
195 197parallel
Strand 7
H
191 192anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
152 153first strand
Strand 2
D
180 181anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
162 165first strand
Strand 2
D
170 173anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il