Analysis of interatomic Contacts of Structural Units in PDB entry:
1DT9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DT9 entry

There is 1 chain in PDB entry 1DT9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 5MET 422
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1DT9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 26Right-handed alpha
Helix 2
2
A
44 60Right-handed alpha
Helix 3
3
A
65 83Right-handed alpha
Helix 4
4
A
103 105Right-handed 310
Helix 5
5
A
133 140Right-handed alpha
Helix 6
6
A
187 198Right-handed alpha
Helix 7
7
A
203 209Right-handed alpha
Helix 8
8
A
233 238Right-handed alpha
Helix 9
9
A
261 272Right-handed alpha
Helix 10
10
A
277 296Right-handed alpha
Helix 11
11
A
304 314Right-handed alpha
Helix 12
12
A
373 381Right-handed alpha
Helix 13
13
A
396 405Right-handed alpha
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There are 3 sheets in PDB entry 1DT9. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 114first strand
Strand 2
A
93 101anti-parallel
Strand 3
A
34 39anti-parallel
Strand 4
A
124 128anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 170first strand
Strand 2
A
158 162anti-parallel
Strand 3
A
145 150anti-parallel
Strand 4
A
225 228parallel
Strand 5
A
253 255parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 303first strand
Strand 2
A
409 412anti-parallel
Strand 3
A
319 323anti-parallel
Strand 4
A
389 392parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il