Analysis of interatomic Contacts of Structural Units in PDB entry:
1DZG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DZG entry

There are 2 chains in PDB entry 1DZG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
I
PRO 4VAL 431
L
ILE 7CYS 430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 1DZG. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
13
I
11 15Right-handed 310
Helix 2
14
I
45 70Right-handed alpha
Helix 3
15
I
79 94Right-handed alpha
Helix 4
16
I
95 106Right-handed alpha
Helix 5
17
I
107 111Right-handed 310
Helix 6
18
I
115 132Right-handed alpha
Helix 7
19
I
155 167Right-handed alpha
Helix 8
20
I
179 181Right-handed 310
Helix 9
21
I
182 194Right-handed alpha
Helix 10
22
I
230 234Right-handed 310
Helix 11
23
I
291 299Right-handed alpha
Helix 12
24
I
300 311Right-handed alpha
Helix 13
25
I
331 339Right-handed alpha
Helix 14
1
L
43 69Right-handed alpha
Helix 15
2
L
79 92Right-handed alpha
Helix 16
3
L
95 106Right-handed alpha
Helix 17
4
L
107 111Right-handed 310
Helix 18
5
L
118 132Right-handed alpha
Helix 19
6
L
155 166Right-handed alpha
Helix 20
7
L
178 194Right-handed alpha
Helix 21
8
L
230 234Right-handed 310
Helix 22
9
L
292 299Right-handed alpha
Helix 23
10
L
302 310Right-handed alpha
Helix 24
11
L
331 339Right-handed alpha
Helix 25
12
L
341 345Right-handed 310
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There are 8 sheets in PDB entry 1DZG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
76 78first strand
Strand 2
L
419 426anti-parallel
Strand 3
L
408 414anti-parallel
Strand 4
L
279 285anti-parallel
Strand 5
L
267 273anti-parallel
Strand 6
L
254 263anti-parallel
Strand 7
L
312 318anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
139 148first strand
Strand 2
L
213 224anti-parallel
Strand 3
L
379 390anti-parallel
Strand 4
L
364 375anti-parallel
Strand 5
L
323 330anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
235 241first strand
Strand 2
L
245 251anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
76 78first strand
Strand 2
I
419 426anti-parallel
Strand 3
I
408 414anti-parallel
Strand 4
I
279 285anti-parallel
Strand 5
I
267 273anti-parallel
Strand 6
I
251 263anti-parallel
Strand 7
I
312 321anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
139 142first strand
Strand 2
I
219 222anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
145 147first strand
Strand 2
I
214 217anti-parallel
Strand 3
I
367 375parallel
Strand 4
I
323 330anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
152 154first strand
Strand 2
I
354 356anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
235 240first strand
Strand 2
I
246 251anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il