Analysis of interatomic Contacts of Structural Units in PDB entry:
1E2M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1E2M entry

There are 2 chains in PDB entry 1E2M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 46GLU 374
B
 MET 46GLU 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 1E2M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
61 68Right-handed alpha
Helix 2
2
A
84 90Right-handed alpha
Helix 3
3
A
95 109Right-handed alpha
Helix 4
4
A
113 140Right-handed alpha
Helix 5
5
A
165 170Right-handed alpha
Helix 6
6
A
170 179Right-handed alpha
Helix 7
7
A
183 193Right-handed alpha
Helix 8
8
A
209 219Right-handed alpha
Helix 9
9
A
228 251Right-handed alpha
Helix 10
10
A
254 259Right-handed alpha
Helix 11
11
A
260 263Right-handed 310
Helix 12
12
A
283 287Right-handed 310
Helix 13
13
A
287 294Right-handed 310
Helix 14
14
A
294 297Right-handed 310
Helix 15
15
A
305 321Right-handed alpha
Helix 16
16
A
332 344Right-handed alpha
Helix 17
17
A
345 347Right-handed 310
Helix 18
18
A
356 373Right-handed alpha
Helix 19
19
B
61 73Right-handed alpha
Helix 20
20
B
84 90Right-handed alpha
Helix 21
21
B
95 109Right-handed alpha
Helix 22
22
B
113 140Right-handed alpha
Helix 23
23
B
164 170Right-handed alpha
Helix 24
24
B
170 179Right-handed alpha
Helix 25
25
B
183 194Right-handed alpha
Helix 26
26
B
209 218Right-handed alpha
Helix 27
27
B
228 251Right-handed alpha
Helix 28
28
B
254 259Right-handed alpha
Helix 29
29
B
260 262Right-handed 310
Helix 30
30
B
283 287Right-handed 310
Helix 31
31
B
287 293Right-handed 310
Helix 32
32
B
294 297Right-handed 310
Helix 33
33
B
305 321Right-handed alpha
Helix 34
34
B
332 344Right-handed alpha
Helix 35
35
B
345 347Right-handed 310
Helix 36
36
B
356 373Right-handed alpha
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There are 3 sheets in PDB entry 1E2M. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 351first strand
Strand 2
A
48 54anti-parallel
Strand 3
A
157 162parallel
Strand 4
A
78 81parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
202 207parallel
Strand 3
A
323 328parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
323 328first strand
Strand 2
B
202 207parallel
Strand 3
B
49 54parallel
Strand 4
B
157 162parallel
Strand 5
B
78 81parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il