Analysis of interatomic Contacts of Structural Units in PDB entry:
1E8Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1E8Z entry

There is 1 chain in PDB entry 1E8Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 144LEU 1092
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 1E8Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
145 159Right-handed alpha
Helix 2
2
A
171 180Right-handed alpha
Helix 3
3
A
180 191Right-handed alpha
Helix 4
4
A
192 199Right-handed alpha
Helix 5
5
A
208 213Right-handed alpha
Helix 6
6
A
240 250Right-handed alpha
Helix 7
7
A
286 289Right-handed 310
Helix 8
8
A
290 299Right-handed alpha
Helix 9
9
A
312 317Right-handed 310
Helix 10
10
A
421 423Right-handed 310
Helix 11
11
A
498 503Right-handed 310
Helix 12
12
A
548 561Right-handed alpha
Helix 13
13
A
568 578Right-handed alpha
Helix 14
14
A
578 583Right-handed alpha
Helix 15
15
A
584 587Right-handed 310
Helix 16
16
A
588 594Right-handed alpha
Helix 17
17
A
600 612Right-handed alpha
Helix 18
18
A
615 620Right-handed alpha
Helix 19
19
A
623 630Right-handed alpha
Helix 20
20
A
637 649Right-handed alpha
Helix 21
21
A
652 660Right-handed alpha
Helix 22
22
A
659 667Right-handed alpha
Helix 23
23
A
668 670Right-handed 310
Helix 24
24
A
675 688Right-handed alpha
Helix 25
25
A
688 706Right-handed alpha
Helix 26
26
A
709 722Right-handed alpha
Helix 27
27
A
725 752Right-handed alpha
Helix 28
28
A
760 775Right-handed alpha
Helix 29
29
A
798 801Right-handed 310
Helix 30
30
A
837 858Right-handed alpha
Helix 31
31
A
888 895Right-handed alpha
Helix 32
32
A
905 915Right-handed alpha
Helix 33
33
A
917 943Right-handed alpha
Helix 34
34
A
948 950Right-handed 310
Helix 35
35
A
988 995Right-handed alpha
Helix 36
36
A
1003 1022Right-handed alpha
Helix 37
37
A
1023 1038Right-handed alpha
Helix 38
38
A
1045 1055Right-handed alpha
Helix 39
39
A
1060 1079Right-handed alpha
Helix 40
40
A
1080 1086Right-handed alpha
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There are 7 sheets in PDB entry 1E8Z. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 235first strand
Strand 2
A
220 225anti-parallel
Strand 3
A
303 309parallel
Strand 4
A
270 274anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 415first strand
Strand 2
A
362 369anti-parallel
Strand 3
A
515 520anti-parallel
Strand 4
A
478 483anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 369first strand
Strand 2
A
407 409anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 467first strand
Strand 2
A
428 434anti-parallel
Strand 3
A
382 389anti-parallel
Strand 4
A
392 398anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
811 816first strand
Strand 2
A
827 833anti-parallel
Strand 3
A
877 880anti-parallel
Strand 4
A
869 871anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
885 887first strand
Strand 2
A
952 955anti-parallel
Strand 3
A
960 962anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
783 785first strand
Strand 2
A
788 793anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il