Analysis of interatomic Contacts of Structural Units in PDB entry:
1F1V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F1V entry

There are 2 chains in PDB entry 1F1V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 4VAL 323
B
 PHE 4VAL 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 1F1V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 36Right-handed alpha
Helix 2
2
A
83 97Right-handed alpha
Helix 3
3
A
162 173Right-handed alpha
Helix 4
4
A
221 235Right-handed alpha
Helix 5
5
A
237 239Right-handed 310
Helix 6
6
A
301 307Right-handed alpha
Helix 7
7
B
27 36Right-handed alpha
Helix 8
8
B
83 97Right-handed alpha
Helix 9
9
B
162 173Right-handed alpha
Helix 10
10
B
221 235Right-handed alpha
Helix 11
11
B
237 239Right-handed 310
Helix 12
12
B
301 307Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 1F1V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
50 54anti-parallel
Strand 3
A
64 68anti-parallel
Strand 4
A
15 25parallel
Strand 5
A
73 81anti-parallel
Strand 6
A
125 129parallel
Strand 7
A
115 119anti-parallel
Strand 8
A
101 104anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 286first strand
Strand 2
A
176 182parallel
Strand 3
A
188 194anti-parallel
Strand 4
A
202 206anti-parallel
Strand 5
A
152 160parallel
Strand 6
A
211 218anti-parallel
Strand 7
A
265 270parallel
Strand 8
A
254 259anti-parallel
Strand 9
A
241 247anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 286first strand
Strand 2
A
176 182parallel
Strand 3
A
188 194anti-parallel
Strand 4
A
202 206anti-parallel
Strand 5
A
152 160parallel
Strand 6
A
211 218anti-parallel
Strand 7
A
309 310anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 46first strand
Strand 2
B
50 54anti-parallel
Strand 3
B
64 68anti-parallel
Strand 4
B
15 25parallel
Strand 5
B
73 81anti-parallel
Strand 6
B
125 129parallel
Strand 7
B
115 119anti-parallel
Strand 8
B
101 104anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 286first strand
Strand 2
B
176 182parallel
Strand 3
B
188 194anti-parallel
Strand 4
B
202 206anti-parallel
Strand 5
B
152 160parallel
Strand 6
B
211 218anti-parallel
Strand 7
B
265 270parallel
Strand 8
B
254 259anti-parallel
Strand 9
B
241 247anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 286first strand
Strand 2
B
176 182parallel
Strand 3
B
188 194anti-parallel
Strand 4
B
202 206anti-parallel
Strand 5
B
152 160parallel
Strand 6
B
211 218anti-parallel
Strand 7
B
309 310anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il